Papaver somniferum (opium poppy): 113306018
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Entry
113306018 CDS
T05758
Name
(RefSeq) DNA topoisomerase 3-alpha-like
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03440
Homologous recombination
psom03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113306018
03460 Fanconi anemia pathway
113306018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psom03032
]
113306018
03400 DNA repair and recombination proteins [BR:
psom03400
]
113306018
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
113306018
DNA replication proteins [BR:
psom03032
]
Eukaryotic type
DNA Topoisomerases
113306018
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
113306018
FA (Fanconi anemia) pathway
113306018
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
PC-Esterase
P116
Glyco_hydro_35
Motif
Other DBs
NCBI-GeneID:
113306018
NCBI-ProteinID:
XP_026410792
LinkDB
All DBs
Position
8:complement(127322809..127323954)
Genome browser
AA seq
381 aa
AA seq
DB search
MLAAQDLYAGGLISYHRTKENLSDEELKRIVDDQVGHPVWGDYADELSRSMTKMKRHAST
QGVGPHTPIVPIKFTAGSEKNWRNEETKKLFQFINKYFLASLSKPASIKTFDAEMMFGAT
SFTSKGEKIITKGFLDIYNYENLAGSELPRYEQKQDCKTAPTFSVGSPIPMSPPHVTDSD
LLSFMDRMGIGTPATVHTHIQGLIDNKLITRDRETMEIEPTALGVALICGYNSMEYKAWS
RDLRDYMVQGMRAISSGERSKNDVLNETLDNLKVWFRRILKGQLEIVRGVRTFLRTFLSN
ETQLHDQDLKMYTTQLEEFKIAEREGLKKNSGVVNNFRLLDTTQMLWLRPDGHPSSYWQK
KKRLASTMIVCIGVCLALLIL
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgctggccgcccaagatctctatgcaggtggacttatcagctaccaccgtacaaaagaa
aatttgtcagacgaagagttgaagagaattgtggatgaccaagtaggtcatcctgtttgg
ggtgattatgcggacgaactttcgagatctatgacaaaaatgaaacgccatgctagtaca
caaggggtcggtccacatactcctatagttccaataaaatttactgctgggtcggagaaa
aattggaggaatgaagagacgaagaagctgtttcaatttataaataagtatttccttgcg
tcgctctcaaaaccagcatcgataaaaacatttgatgcagaaatgatgtttggtgctaca
tcctttactagcaaaggagaaaagattatcactaagggcttcctggatatatataactac
gaaaaccttgcaggatccgaactccccagatatgaacagaaacaagattgtaaaacagca
ccaacattctcagttggatctcctatcccaatgtcaccgcctcatgtaacagattcagat
ctcttgtctttcatggacaggatgggaattggtactcctgctactgtgcacacgcacatt
caagggttgatagacaataaacttattactagagatcgtgagaccatggagatcgaaccc
accgctcttggggtggcactaatctgtggctataattccatggaatacaaagcctggagc
agggatcttagagattacatggtccaaggtatgcgtgctatatcctcaggggaaagatct
aaaaatgatgttttaaatgaaacactggataacctgaaagtttggtttcggaggatacta
aaaggccaactggagatagtaaggggcgttagaacgttcttaagaacattcttgagtaat
gagacgcaattgcatgatcaagatctcaagatgtatacgactcaattggaggagtttaag
attgccgagagagaggggctgaagaagaattcaggggtcgtcaacaattttagattgctt
gatacaactcaaatgttgtggttgagaccagatggacatccaagtagttattggcaaaag
aaaaagaggttggcaagtacaatgattgtgtgcattggtgtttgcctggccctattgata
ctttga
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