Papaver somniferum (opium poppy): 113306054
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Entry
113306054 CDS
T05758
Name
(RefSeq) uncharacterized protein LOC113306054
KO
K15542
polyadenylation factor subunit 2
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113306054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113306054
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
113306054
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_Gbeta
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
Beta-prop_EML
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_Aladin
Beta-prop_WDR19_1st
Beta-prop_EIPR1
RVT_3
Beta-prop_RIG_2nd
eIF2A
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_HPS5
WDR90_beta-prop_4th
Beta-prop_SCAP
NBCH_WD40
PEP5_VPS11_N
Tricorn_2nd
RNase_H
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_SPT8
WD40_like
WD_LRWD1
Beta-prop_WDR75_2nd
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
113306054
NCBI-ProteinID:
XP_026410823
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All DBs
Position
8:132257272..132336828
Genome browser
AA seq
1018 aa
AA seq
DB search
MIKDPWLVANLEITTELWRLRNKVYFEDVVVHWIGFKGRVYQLIRDNSIRMKGHINNTME
DLRILNYFKVRHRSCKVSSPIEVRWFPPNQDEIMICCDGASLGNPGPTGAGVTFRDANAA
VLGVLCVGLRLQTNFYTEVCAVIYGAMLARKWNFRSICVQSDSMSCIQAFQNEDASAKQA
CLLDEDIFEFYEGRPVSMLSVKWPGERESWREIDVTVAEVMEIKDMEFEAEKEMKNGHGQ
FCPISVQLLAMVCGCLSRVERTQQQGIEVADYGLVLSRGIIEDSQNPSFRTGKSFDIETV
DVRYGFSYDPKNEDHRVGTLVITSFRSADLNVYSLKADIWKTSSIQFVHAPKGELQRQLQ
MPHELLGTTELQMCALGGALYLYWSDQEGAQVWLMKDYAVQDSWIRLISIDHKVFPIHPY
FHLKGILGGLVLFERPGKDQFVYHLQQKRMIKLQIYEGYESDDDYDGWNDYIRVVYMWSI
SWSMDQLSESRYRHEIRIRASLVDSRDRTVLQPISDAATEMLPRIVNADNPSTSFAANFV
HASTDKNRCSINRLLWTPSGRYLLTGSQRGEITIWNGQSFNFEMTLQAHDQAIRSMVWSH
NGNWMVTGDDLGTIKCWGSSLNNFKINKSAHKELVCDLSMAGHGRNVKSVDCHPTKSLLA
SGGKDNLVKLWDAESGKELQSLHGHKKTVTCVKWNQNGNWLLTASEDQLIKLYDVRAVKE
LRSFRGHWNDVTALAWDPFHEDYFVSGSFDASIFHWLVAHDTAQVEITGAHENSVRGLAC
HPSGYNLCSSSNDHTTRFWCRNRLGDPPWDRFNTGYEQGFDVYNPALVGRVPSNFSVPDG
PSTGPFATGLPRNEGAIPGIGVAMRLSMPFRQRIGGEQQRQSFPVSMLVRPPQLPLGSHP
SLLAPGQSYHQFFPHMLPPQQQHHQPYQQQIPSLQVPPSNMPLISHSHLSRPPQMAGFLL
MLSVSNSQQLPPMPGEMGMQGSMNQTVPPMPYGHMMDQMHSGSVPANALQQPPHGDYA
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgattaaggatccgtggttggttgctaatcttgaaatcactacggagttatggaggctg
cgcaacaaagtttattttgaagatgttgttgttcattggataggctttaaaggtagagtt
tatcagttaattcgtgataattcaatacggatgaagggccatataaataatacaatggag
gatttacgtatcttgaattatttcaaagtgaggcatagatcgtgcaaagtgtcttctcca
attgaggtaaggtggtttcctcctaaccaagatgaaatcatgatttgttgtgatggtgcg
tcccttggaaatccaggcccgactggtgctggtgttacttttcgtgatgcaaatgcagct
gttttgggtgtcctctgcgttggcctgagactgcagacaaacttttatacggaagtgtgc
gcagttatatatggtgctatgttggccagaaagtggaattttaggagtatctgcgtacaa
tccgattcgatgagttgcattcaagctttccaaaatgaggatgcttcggctaagcaagca
tgtttgctagatgaggacatttttgagttttatgaggggagaccagtttctatgctttct
gtaaaatggccgggtgagcgagaaagctggagagaaattgatgttactgtcgctgaagta
atggagattaaagacatggaattcgaagctgagaaggaaatgaagaatggtcacggccag
ttttgccctatttcggtacagctgctagccatggtttgtggctgcttatcaagggtcgag
agaacacaacaacaaggcatagaagtggctgattacgggttagtcttgagcagaggcatt
atagaagactcccagaacccttcttttagaacgggaaaaagttttgatatagaaactgtg
gatgttagatatgggttctcttatgacccaaaaaatgaagatcatagagttggaacactg
gtgattacatcgtttagatctgctgatctgaatgtctactccctaaaggcagacatatgg
aagacaagtagtatccaatttgtacatgctcccaagggagagctacagagacaactccag
atgccgcatgaacttttgggtaccactgaattacagatgtgtgcacttggaggtgcttta
tatctatattggagtgaccaagagggtgctcaagtatggctcatgaaggattatgctgtc
caagattcttggataagactgatctctatcgatcataaagtatttcctatacatccgtat
tttcatctaaaggggattctaggtggactcgttctctttgagaggccgggtaaagaccaa
ttcgtgtaccatcttcaacaaaagagaatgataaaactgcagatatatgaggggtatgaa
agcgatgatgattatgatggatggaatgattatataagagtagtctatatgtggtcaata
tcgtggagcatggaccaactatcagagtcaagatacagacatgagatccggatccgtgct
tctctggtagattcaagggataggactgtgttgcaacctatctcagatgcagcaacagag
atgctgccgagaattgtcaatgcagataatccatcgacaagttttgctgcaaactttgtt
catgcatccactgataaaaataggtgttcaataaatcgtttgttgtggactccttcaggg
agatatcttttaactggttcgcaaagaggtgaaataactatttggaatggacaatcattt
aacttcgagatgactcttcaggctcacgatcaagcaattaggtctatggtatggagtcac
aacgggaattggatggttacaggggatgatctaggcacaataaagtgttggggaagtagc
ttgaataatttcaagataaataaatctgctcataaggaattagtctgcgatttaagtatg
gcaggccatggtcggaatgttaagagtgtcgattgccacccaacaaagtcattactagct
tcaggtggcaaagacaatcttgtaaaactctgggatgctgagtctgggaaagagcttcaa
tcgttgcatggtcataaaaagacagttacttgtgttaaatggaatcagaatggtaactgg
ctactaacagcttcggaggatcaactcatcaagctttatgatgttagagctgtgaaagag
cttcgatcctttcgtggacattggaacgatgtaactgctcttgcatgggatcctttccac
gaagattactttgtcagcggcagttttgatgcgtccatcttccattggctcgttgcgcat
gatactgctcaggtcgaaataactggggcacatgaaaatagtgtacggggccttgcatgt
catcctagtggctataatctttgcagcagtagcaatgatcatacaacaaggttttggtgt
agaaatagactaggagatcctccttgggatagattcaatacaggatatgagcaaggattt
gatgtgtacaatcctgctctggtgggtcgtgtgcccagtaatttctcagtacctgatggc
ccatcgactggacctttcgctactggtctgcctcgaaatgaaggagccattcctggtatt
ggagttgcaatgcgactatccatgccattcagacagcggatcggaggcgagcaacaacgg
caatcttttccagtttctatgcttgtgaggccacctcagcttcctctgggttcgcatcca
tcccttcttgcccctggtcaatcttatcatcagttttttcctcatatgctgcccccacaa
caacaacatcatcaaccataccaacagcaaataccttctttacaagtcccaccctcaaat
atgccgctgatatcacattctcatttgtctcgccctccccaaatggcaggtttcttgctc
atgctctctgtgtctaactcgcaacaattgccaccaatgcccggtgaaatgggtatgcaa
ggttcgatgaatcagacagtcccgccaatgccatacggacatatgatggatcaaatgcat
tcaggatctgtaccggccaatgccctacaacaacctccacatggtgattatgcatag
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