Papaver somniferum (opium poppy): 113306973
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Entry
113306973 CDS
T05758
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113306973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113306973
03036 Chromosome and associated proteins [BR:
psom03036
]
113306973
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
113306973
Coactivators
SAGA/TFTC/STAGA complex
113306973
Chromosome and associated proteins [BR:
psom03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
113306973
STAGA complex
113306973
TFTC complex
113306973
SAGA complex
113306973
SLIK complex
113306973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
LisH_PAC1
WD40_like
LisH
Beta-prop_DCAF12
PALB2_WD40
Beta-prop_NUP159_NUP214
Beta-prop_VPS8
Cytochrom_D1
CTLH
Motif
Other DBs
NCBI-GeneID:
113306973
NCBI-ProteinID:
XP_026411679
LinkDB
All DBs
Position
8:51023674..51032895
Genome browser
AA seq
669 aa
AA seq
DB search
MEDEDIEKAVMAYLKKKGFKQTALALKEEQSKSSSSNVSHTDPDVSKQLLSFSESENDPA
RYQDGYSKLRSWTYGSLDLYKHELLRVLYPVFIHCFMDLVAKGHTQEARTFFSSYREDHE
MMHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVKIKLCQYSHELLVQYLQKPQSSKMFGI
VNEHITFEVSPGQPSSISDETEVVTLIGISQDTAKQINEKEIHWGLLEDSLEEHLEKAGG
MMPESEKGEGETKEGDLEECKKRSTDGGKQGPSAKKLKKDKVVSATGKSARAETNAVSVA
PRVKAELTLPVVPIEVEHSILEDLRNRVQLGSMALPSVCFYTFINTHNGLNCSSISHDGS
LVAGGFSDSSLKVWDMAKIGQQGGAATMQRGNGTTPTEQLVGTDDGKRSYTLFQGHAGPV
YSATFSPLGDFILSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHD
RTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRIFI
GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLTGHTSCVWALDFSGEGSLL
ASGSADCTVKLWDVTASTKIPRAEENKAGSTNRLRSLKTLPTKSTSVYSLRFSRRNLLFA
SGVLSKGAR
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgaagatatagagaaagcggtaatggcatatttgaaaaaaaagggttttaaa
cagacggcactagcattgaaagaagaacaaagcaagagttcttcttctaatgtttcacat
actgatcctgatgtttccaaacaacttctctccttctctgagtcggagaacgatcctgca
aggtaccaggacggctacagcaagttaaggtcatggacatacggttcattagatctttac
aagcatgaattgctgcgagtgctttatccagtatttatccattgttttatggatcttgtg
gcaaaaggacatacacaggaagctagaactttttttagcagctaccgcgaagaccatgag
atgatgcacttgagggatcttcaaaagctggaaggcgttctttctccctcacatctggag
gaaatggaatttgctcattctcttaggcagagcaaagtgaagattaagttatgtcagtac
tcgcatgagctgctggtgcaatatctgcagaaaccccagtcctcaaaaatgtttggaata
gtcaatgagcatataactttcgaagtttctcctggacagccaagctcgatatctgatgaa
acggaggtagtaactctaattggaatcagccaggatacagccaaacagataaatgagaaa
gaaatacattggggattgcttgaagattctttggaagagcatctggaaaaagcagggggg
atgatgccagaatctgaaaaaggtgagggagaaaccaaagaaggtgacttggaagaatgc
aagaagagatcaacagatggcggaaagcaaggtccttcggctaagaaactgaaaaaggac
aaggttgttagcgcaacgggaaaaagcgctcgcgctgagacaaatgctgtatccgtagca
ccgcgagtcaaggcagagctgactttgccagtagtgcccatagaagtagaacattccatt
ctagaggacctgagaaaccgtgttcagttgggtagcatggcactaccatcagtttgcttt
tatacatttataaacacacataatgggctgaactgttcatcaatatctcatgatggatca
ttagttgctgggggattctcagactcctcactgaaggtgtgggatatggctaaaattggg
caacaaggtggagctgctactatgcagaggggaaatgggacaactcctaccgaacagttg
gtgggaacagatgacgggaaaagatcttatacattgtttcaaggtcatgctggacccgta
tattctgccacatttagtccacttggtgattttattttatcatcatcttcagactctacc
attcgattatggagcacgaagctgaatgcgaatcttgtttgctataaaggtcataattac
cctgtctgggatgtccagtttagtcctgtgggccattattttgcaagctcttcgcatgat
cggacggctaggatatggtctatggacagaatacagcctctaagaataatggcaggacat
ttatctgatgttgattgtgtgcagtggcatgcaaattgtaattacatagcaactggttct
agtgacaagactgttagactgtgggatgtgcaaagtggggaatgtgttcgcatatttata
ggccataggagtatgatattatctttggcaatgtcgcctgatgggagatatatggcatca
ggtgacgaagacggtaccatcatgatgtgggatctttcaagcggtcggtgtgttacccct
ctgactggtcatacctcatgtgtgtgggcacttgacttcagtggtgaaggttcacttctg
gcttccgggtctgccgattgtaccgtaaagttatgggatgtaacagcaagcacaaagata
ccaagggcagaggagaacaaagcaggaagtacaaacagattaagatcgttaaaaacccta
ccaaccaaatctacttcagtttattcattacggttctctcggagaaatcttttattcgcg
tctggggttctctcaaaaggcgcacgatag
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