Papaver somniferum (opium poppy): 113307716
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Entry
113307716 CDS
T05758
Name
(RefSeq) THO complex subunit 4B-like
KO
K12881
THO complex subunit 4
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03013
Nucleocytoplasmic transport
psom03015
mRNA surveillance pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113307716
09122 Translation
03013 Nucleocytoplasmic transport
113307716
03015 mRNA surveillance pathway
113307716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113307716
03041 Spliceosome [BR:
psom03041
]
113307716
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
113307716
TREX complex
113307716
Spliceosome [BR:
psom03041
]
Complex C
Other components
EJC/TREX
113307716
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
113307716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
Motif
Other DBs
NCBI-GeneID:
113307716
NCBI-ProteinID:
XP_026411949
LinkDB
All DBs
Position
9:complement(9732280..9734815)
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AA seq
256 aa
AA seq
DB search
MSTSLDMSLDDLIKNNKTSEGGGRGGSSSFRGRGRARGGGGFGYGGGRTTRGGGSFGLGP
TRRFQNRGIRRAMPYAISNVVGMYDMYAAAAVDTGSNKLYISNLDYGVSNEDIKELFSEV
GEIQRYSVNYDRSGRSKGTAEVVFAQRSDAAAAVKRYNNVQLDGKPMKIEIVGASIAPPV
FPAVNTAIFANPVSFPQRGIRRGGAMGRLRGGRGSGGRISQRGGGRGRGRGRGEKVSATD
LDADLDKYHTEAMQIN
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacttcactagatatgtctttagatgatctaatcaagaacaacaagacatctgaa
ggtggaggaagaggcggttcttcttctttcagaggtagaggtagagccagaggtggtggt
ggttttggttacggtggtggcagaaccaccagaggcggtggtagtttcggtttaggtcct
actcgtcgttttcaaaaccgtggaatccgtcgtgctatgccttacgctatttcaaatgtg
gtagggatgtatgatatgtatgctgctgctgctgtggatactgggagtaacaagctttat
atctctaatctggattatggtgtttcaaatgaagatatcaaggaactcttctcagaggtt
ggtgaaattcagcggtattcagtcaattacgataggagcggaagatcaaagggcacggca
gaagtggtctttgctcagcgttcagatgctgcagcagctgtcaagcggtacaacaatgtt
caacttgatggaaagccaatgaagatagagattgtgggagcaagtatcgcgcctcccgta
ttccccgcagtaaacactgctatatttgcaaatccagttagctttcctcaacgtggaata
cgaaggggtggagctatgggacgactcagaggtggcaggggtagtggaggtcgcatttcc
cagagggggggaggtcgtggcaggggaagaggccgtggtgaaaaggtgtctgcaactgat
ctggatgccgatttggataagtaccacacagaagccatgcaaataaactaa
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