Papaver somniferum (opium poppy): 113309145
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Entry
113309145 CDS
T05758
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
113309145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psom04131
]
113309145
Membrane trafficking [BR:
psom04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
113309145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
Beta-prop_EML_2
zf_RING_Vps8
WD40_Prp19
WDR55
Beta-prop_HPS5
WDR90_beta-prop_4th
zf_RING_Vps8_fungal
zf-RING_2
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_like
PEP5_VPS11_N
Beta-prop_WDR11_2nd
Importin_rep_6
Motif
Other DBs
NCBI-GeneID:
113309145
NCBI-ProteinID:
XP_026413345
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All DBs
Position
9:complement(59256881..59263471)
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AA seq
948 aa
AA seq
DB search
MGHSPSENGVEGDDEREEEEEDDDEEEEDQEVEEEEEEDEPRLKYQRMGGSIPTLLSNDA
ASCIAVAERMIALGTHDGTIHILDFLGNQVKEFRSHTATVNDLSFDVDGEYVGSCSDDGF
VVINSLFTDEKMRFEYYRPMKAISLDPEYSRSSSRRFVAGGLAGQLFMNAKKWLGSRDQV
LHSGEGPIHAVKWRTSLIAWANNAGVKVYDTANDQRITFIERPTGTPRPELLLPHLVWQD
DTLLVIGWGTSVKIAAIRGNGYTGTNGTQRHVAFSSTKQVDIVASFQTSYCISGIAPYGD
ALVVLAYIPEKEDGEKEFSSTAPSRQGNAQRPEVRIVTWKNDELTTDALPVHGFEHYKAK
DYALAHAPFSGSSYAGGQWAAGDEPMYYVVSPKDVVIAKPRDAEDHIAWLLQHGNHEKAL
AAVEAGQGPTELLDEVGTRYLDHLILERRYADAASLCPKLLRGSSSAWERWVFHFAHLRQ
LPVLVPFIPTENPRLRDTAYEVALVALATNPSYHKDLLSTIKSWPSVIYSALPIISAIEP
QLNTSSMTDALKETLAELYRIDGQYEKALGLYADLLKPELFDFIEKYNLHDAIREKVVEL
MILDAKRAVSLLIHHKDIIPPVEVVPKLLAARKKCDSRYFLHLYLHSVFVTSPDAAKDFH
DMQVELYADYDQKMLLPFLRSSQHYHLEKAYEICVKRDLLREQVYILGRMGNSKKALAVI
VNKLEDIEEAVEFVTMQHDDELWEELIKQCLHRPEMVGMLLEHTVGNLDPLYIVNMVPNG
LQIPRLRDRLVKIITDYRTEMSLRHGCNDILKADCVNLLVKYYKEARHAVCLGGGEDEVR
PKRDDNGRSTGNDRRGGSAAGSIKRLEVKYKTRGGGRCCMCFDPFSIQDVSVTVFFCCHA
YHTSCLMDSMHSLSSTSEKDDSDDDDEDDENKSSLPRIRCILCTTAAQ
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgggtcatagtccttcagagaatggagttgaaggagatgatgaaagagaagaagaagaa
gaagatgatgatgaagaagaagaggatcaggaagttgaggaagaggaggaagaagatgaa
cctagattgaagtatcaaagaatgggtggaagtattcctacgcttttatctaatgatgct
gcttcttgtattgctgttgctgaacgtatgatcgctcttggaactcatgatggaactatt
catatccttgattttctcggaaatcaggtgaaggagtttcgttctcacacagctactgta
aacgatctcagctttgacgtagatggtgaatacgttgggagttgctcagatgatggattt
gtagtaataaatagtctgtttactgatgagaaaatgaggtttgagtattaccgccccatg
aaagcgatctctcttgacccagaatattcaagaagttcatctcggaggtttgttgctggt
ggtttagcgggtcagttatttatgaatgcaaagaaatggctaggatcccgtgaccaggtt
cttcactcgggcgagggtccaatacatgcggtgaagtggagaacaagccttattgcatgg
gctaataatgctggggtcaaagtatacgacacagcaaatgatcagcgcatcacatttatt
gagaggccaactggaaccccacgccctgagctcttactacctcatctagtttggcaggac
gatactctcttggttattggttggggaacttcagtaaaaattgctgcaataagagggaac
ggatatacaggaaccaatgggacacaaaggcatgtggccttttccagtacaaaacaggtt
gatattgtggcgtctttccaaaccagctattgcatttcaggaattgcaccctatggtgat
gctttggttgtccttgcttatattcctgaaaaagaggatggagaaaaagaatttagtagc
actgctccatcacgtcaggggaatgcacagagaccagaagtacgtatagtcacgtggaaa
aatgatgagcttacaactgatgctcttccagtacatggttttgagcattacaaggcaaag
gattatgctcttgctcatgctcctttctcaggtagcagctatgcgggtggtcaatgggct
gctggggatgaaccgatgtattacgtagtctcccctaaagatgtcgtcattgcgaagcct
agggacgctgaagatcatatagcttggcttcttcaacacgggaatcatgagaaagcattg
gctgcggttgaggcaggacagggaccaacagaacttctcgatgaggttggaacaagatac
cttgatcatctgatattggaaaggagatacgctgacgctgcttctttgtgccccaagttg
ttgcgtggatcttcttcagcatgggagagatgggttttccactttgctcatcttcgccag
cttcctgtcttggttccattcataccaactgaaaatccaaggttgcgcgatactgcttat
gaggttgctttagtggctctggcaacaaatccttcttatcacaaggacctcctatcaact
attaaatcttggccatcagtgatatattctgcattgcctattatttcagcaatagaaccg
cagcttaatacgtcatccatgactgatgcacttaaagagactttggccgagttgtataga
atcgatggacagtatgagaaagcccttggattatacgctgatctcttgaagcctgaattg
tttgacttcatcgaaaagtacaatttacatgatgcgattcgtgaaaaggttgttgagctg
atgatattggatgctaaacgagcagtctctctactgatccaccacaaggatataattcct
ccagtggaagttgttccaaaactattggctgctcgtaaaaagtgtgattcaagatatttt
ttgcacttatacctgcattcggtatttgtgactagtccagatgctgctaaagatttccat
gatatgcaggtggagctctatgctgactatgatcaaaagatgttgcttccttttcttcga
agcagtcagcattatcatcttgagaaggcatatgaaatttgcgtcaaaagggatcttttg
agagaacaagtctatatccttggaaggatgggcaactcaaaaaaagctctggctgtcatc
gtgaataagctagaggacatagaagaggctgtagaatttgtgactatgcaacatgacgat
gaactctgggaagaattaatcaagcaatgtctacacagacctgaaatggtgggcatgttg
ttggagcacactgttggtaaccttgatccgttatacattgtaaatatggtccccaatggt
ttacagatacctcgtcttagggatcgtctagtcaaaatcattacagattacaggacggag
atgtctcttagacatggatgcaatgatattctaaaggcagattgtgttaacctgttggtg
aagtactataaggaagcacgacatgcggtttgcttgggtggtggagaagatgaagtgcga
cctaaaagagatgacaatggcaggtctacaggtaacgatagaagaggaggatcagctgca
ggaagtattaaaaggctagaggtaaagtacaaaacaagaggtggtggaaggtgttgtatg
tgctttgatcccttctcaattcaggatgtatctgtcactgtgttcttttgctgtcatgcc
tatcatactagctgccttatggattcaatgcattctttaagcagtacaagtgaaaaggat
gacagtgacgacgacgatgaagatgatgaaaacaagtctagtttacctcgaattcgttgt
atcctatgtactacagctgctcaatga
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