Papaver somniferum (opium poppy): 113309539
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Entry
113309539 CDS
T05758
Name
(RefSeq) protein RRP6-like 2 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113309539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113309539
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
113309539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Bep_C_terminal
Motif
Other DBs
NCBI-GeneID:
113309539
NCBI-ProteinID:
XP_026413754
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Position
9:complement(98141649..98149653)
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AA seq
903 aa
AA seq
DB search
MESDSEKINKQKAEALQAFINGPLSSSISKLSASIKAIPHNEDFHFFNNFEEFKKPVKDM
SEKSKSMLIAIGDLNYPLDKPIPFPDGLDECNDWLTDVTDDIYERFDVSIDEFKSIRNKE
EEMGRKIVTSDDGFQLVCRRNKKGGGGFVGNEEESSKKLSSPSLSVKVASKDKKTTGAKP
KVPFHIPTVKRPQDEYNIIVNNINQPFEHVWLSRSEDGCRFIHPLENLSVLDFVDKNIGD
TEPEKPLPLESTPFTLIEDVKQLKELSKKLRDVNEFAVDLEHNQYRSFQGMTCLIQISTR
TEDFIVDTLKLRVHVGPYLREVFKDPSKKKIMHGADRDILWLQRDFGIYVCNLFDTGQAS
RVLELERNSLEFLLNHFCGVAANKEYQNAEWRLRPLPDEMVRYAREDTHYLLHIFDIMKG
MLLSASTSSENGEDLLLEVYNRSCAICMQLYEKELLTDTSYLYIYGLQDADLNSQQLAIV
AGLCEWRDAVARMEDESTGFILPNKALIEIARQKPDSASKLRRLVKSKHPYIEHNLGTVV
AIIKNALQNAPAFEIAAEQLKEQVKERALTASKQHTEVVPDEFEASPTSEDRTEMEESPP
AHPEMINTDVSNSVNSSVLRDKQVAAELNNGNNTLHGVSVEQSSRGIGDGKKEENTGTGS
CLFPTKAVPEVTVQVLKKPNRAFGALFGNSGSKRKLDPNSKDKAQMKVEQIKSSVTLPFH
SFMGNDQSKPLVEVRTKSSDFSLPDEQIPPGDEVAKVDDIIPLESDQGINGDGAESESDK
DEQPMSLSELSSNFKKCFQPKQELRRNKVEKSQESEEVSLNFEPFNYEAAREHQKFGKDQ
EEKQEAEEGDEQGPKSPKESKGRRKKPVFTRLPTEEEAKAFQQQARRRQAFPQSGNRSST
FRS
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtgattcagagaaaatcaataagcaaaaggcagaagctttacaagcttttatt
aatggtccgttatcatcttctatatctaagctatctgcttctataaaagctattcctcat
aatgaagattttcatttttttaataactttgaggaatttaaaaaaccagtcaaagatatg
tctgagaaatctaaatctatgttgattgctattggtgatttgaattatccattagataaa
cctattccgtttcctgatggtttagatgaatgtaatgattggttaactgatgtaacagat
gatatttacgaaagatttgatgtttcaattgatgagtttaagagtataagaaataaggaa
gaggaaatgggtaggaagattgttacttctgatgatgggtttcagttggtttgtaggaga
aacaagaaaggaggaggagggtttgttggtaatgaagaagagagtagtaagaagttgagt
tctccttcattgtctgtgaaggtggcatcaaaagataagaagacaactggggcaaaaccg
aaggttccttttcatatacctacagtgaagcggccacaagatgagtataatatcattgtt
aacaatataaaccagccatttgagcatgtttggttgagtaggagtgaagatggctgcagg
tttattcatcccctggaaaatctttctgtgctggattttgttgataaaaacatcggtgac
actgaacccgaaaaacctctgccactagaaagcactccatttactctgatagaggatgtt
aaacagctgaaagaactgtctaagaagctgcgtgatgtgaatgaatttgcggttgatttg
gagcataaccagtataggtccttccaaggaatgacttgcttgattcagatttctactaga
acagaggattttatagtagatacattaaagctccgtgtacatgttggtccatacctaagg
gaagtgttcaaagacccctctaagaaaaagatcatgcatggggctgatcgggatatactg
tggcttcaacgagattttggcatatatgtttgcaacttattcgacactggacaggcatca
agggtgttggagttagagcggaacagtttggagtttcttctaaatcacttttgtggtgta
gctgcgaacaaagaataccagaatgcagaatggagactcaggcctcttcctgatgagatg
gttagatatgccagagaggatacacattatctgttgcatattttcgacattatgaaaggc
atgttgctttcagcatctaccagctctgaaaatggtgaagatcttctgttagaggtctac
aaccgaagttgtgccatatgcatgcaactttacgaaaaggagctgttgaccgacacatcg
tatctctacatctatggtttacaagatgctgatttgaactctcagcagcttgctattgtt
gctgggctttgtgaatggagagatgctgttgcccgtatggaggatgaaagcactggcttt
atattgccaaacaaagcactaatagaaattgccaggcagaagcctgacagtgctagtaag
ttgcgccgactagtgaagtcaaagcatccatatattgagcacaatcttggaactgtagtt
gccattataaaaaatgccttacaaaatgctccagctttcgaaatcgctgctgaacaactg
aaggaacaagtgaaggaacgtgcattaacggcatccaagcaacatacagaagtagttcct
gacgaatttgaagcctcgcctacttcagaggatcgtacagagatggaggagtccccccct
gctcatccagaaatgattaacactgacgttagcaacagtgtgaacagtagcgttttacgt
gacaagcaagtggctgcagaactcaacaatggtaataatactttgcatggagtgtccgtg
gaacagagttctcgtggaattggagatggaaagaaagaagagaatactggaacaggctct
tgcttatttcccacaaaggctgttccagaggtgaccgttcaagtgttaaagaagccaaat
cgtgcttttggggcattgtttggtaactcgggttcaaagagaaaacttgatccaaattct
aaggataaggctcagatgaaggttgaacagatcaaatcatcggtaactcttccttttcac
tcattcatgggcaatgaccagtcaaaacctcttgtagaagtgagaactaaatcctctgat
ttctccctgcctgatgaacaaattcctccaggggatgaggttgcaaaagtagatgatata
attccattggagagtgatcagggaataaatggcgatggtgccgagtctgaatcggataaa
gatgaacaacccatgtctctctctgaattatcctccaactttaagaaatgttttcagccg
aaacaagaactaagaagaaacaaggttgagaaatctcaagagtctgaggaagtaagtttg
aattttgagcctttcaattatgaagcagctagggaacatcaaaaattcgggaaagatcaa
gaagaaaagcaggaagcagaggagggcgatgaacaaggacctaaaagtccgaaagagtcc
aaggggaggcgcaagaaaccagttttcacccgactacctacagaagaagaggccaaggca
tttcagcagcaggccagaaggcgtcaagcttttccacagagtgggaaccgaagttcaacc
tttcgttcttag
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