Papaver somniferum (opium poppy): 113309728
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Entry
113309728 CDS
T05758
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
psom
Papaver somniferum (opium poppy)
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113309728
03036 Chromosome and associated proteins [BR:
psom03036
]
113309728
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
113309728
Chromosome and associated proteins [BR:
psom03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
113309728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
SPT6_acidic
HHH_7
YqgF
Tex_central_region
Spt6_S1
HHH_9
HTH_44
S1_RRP5
HHH_3
Tex_N
Motif
Other DBs
NCBI-GeneID:
113309728
NCBI-ProteinID:
XP_026414026
LinkDB
All DBs
Position
9:complement(182592051..182599765)
Genome browser
AA seq
1619 aa
AA seq
DB search
MGGGRTVVSDDEDEIEEEEGRETLDADAVDAGDRDEDEDEEDDEEGQDEYEKDGFIVDDV
DEEDQDEEENRASSDEEKQKKKKRKKRESEKNYVLDEDDYELLQDNNVGFHRPAPGSKKF
KRLKKAGRDNDLDEHTGLSDNDEADRSGRKGRSAEEKIKNSLFDYEEAQHLEDVVEEEDE
AVSLEEDDMDDFIVSEEEYDEHGALPRRKKTHKKKARQAPGVSSSALQEAHDIFGDVDEL
LMLRKKGLEKSSRYEDSREKRIEDEFEPFILSEKYMTEKDEVIRDLDVPERIQISEESTG
SASTEQMLIEDESSWIINQLNATMGSLFGDSDFGEQNDEERMEKLQKAKGDVLKLLELMH
VQKHDIPFIAMYRKELCSVLLKDPDQNESTVGEEKEKGTRKLKWHKVLWAIKDLDRKWLL
LQKRKKALQAYYFKRYDEESRRIYDETRLNLNQKLYHSIVDSLKSAESEREVDDVDAKFN
LHFPPGEVGVDEGQFKRPKRKTQYSICSKAGLWEVASKIGSSSELFGLHLTLEKMRLDEL
EDAKETPEEIASNFTCAMFENPQAVLRGARHMAAVELSCEPRVRKHVRNIFMEKAVVSTS
PTPDGNVAIDSFHQFADIKWLSQKPLTKFEDAQWLPILKAEEEKLIQVSLKLPEEDLNKL
LGECNENYLSEGVSKPAKLWNEQRKMILEDTFKQVLPLMEKEARSVLNARAKNWLIMEYG
KHLWDKVSVAPYQGKEADVGPDDEAAPRVLACCWGPGKPATTFVMLGSSGEVLDVLYAGS
LSLRSQSVTDQQRKKNDQQRVLKFMTDHQPHVVVLGAVALSCTKLKEDIFEIIFKMIEEY
PREIGQEMEELNVVYGDESLPRLYENSRISSDQLPGQPGIVRRAVALGRYLQNPLAMVAT
LCGPGKEILSWKLDSLDHFLTPDEKYDMVEQVMVDVINQVGIDINLAASHEWLFSPLQFV
SGLGPRKAASLQRELVRLGVITTRKELAPLLKRKVFINAAGFVRVRRSGLAANSHHIIDL
LDDTRIHPESYELAKRMAKDVFDADDLDDSNDADEDAQEMAIEHVREKPNFLKALDINEY
ARSRNAIDKLETLKDIKNELLHGFRDWRTPYREPDQDEEFYMISGETKNTIAEGRIVQAT
VRKVQPQRLICVLESGLTGWVMSDDYSDHNRQIDLTEEVNEGDIVTCKIKSIQKNRYQVY
LTCKESELKRDRYRSSQNHDPYYKPDESSLHTEKEKARKEKELAKKHFKPRMIVHPRFQN
ITADDAFEFLSDKEPGESIIRPSSRGPSFLTLTLKVYDGVYANKDIVEGGKDHKDITSLL
RLGKTLKIGDDTFEDLDEVMDRYVDPLVGHLKTMLSYRKFKKGSKAEVDDVLRVEKSEYP
MRIVYCFGISHEHPGTFILSYIRSTNPHHEYIGLYPKGFKFRKRTFEDIDRLVAYFQKHI
DDLQHDSGPSIRSVAAMVPMRSPANGGSSGGWGGSTTNSNDGGWRDNSNLDRDKSSTPGS
RSGRGDFRNGGGRDHPSGVPRHYGGGGRGRGRGRDSYNGGGRGNNDRQDSGGWGGGSSGG
GGSGWGSGGWGSPGGTKDADAMDTSGNDAGNNSGWGGGSKKSSSTQHEGGSGWGGGGGW
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
atgggaggaggaagaactgttgtttcagacgatgaagatgagatcgaagaggaagagggg
agagaaactcttgatgcagatgcggttgatgccggtgatagagatgaggatgaagatgag
gaagacgatgaggaagggcaagatgagtatgagaaagatgggtttatagtagacgatgtt
gatgaagaagatcaggatgaagaagagaatagggcaagtagtgacgaggagaaacagaag
aagaagaaaaggaaaaagagagaatctgagaagaattatgtcttagatgaggatgactat
gagttactgcaggataacaatgtgggctttcaccgtcctgcaccaggaagcaaaaagttc
aagcgactgaagaaagcagggagggataatgatttggacgagcatactggtttatctgac
aatgatgaagcggatagaagtggtcgtaagggaagaagtgctgaggaaaagatcaagaac
agtctatttgattatgaggaagctcaacatcttgaggatgttgttgaggaagaagatgaa
gcagttagcttagaggaggatgatatggatgattttattgtgagtgaagaggaatatgat
gagcatggagctcttccaaggaggaagaagacacacaaaaagaaagcgagacaagcgccc
ggagtttcatcttctgcattgcaggaagctcatgatatatttggtgatgttgacgagctc
ttaatgcttcggaagaagggcctggaaaagagtagtaggtatgaagattctagagaaaag
aggattgaagatgagttcgaaccatttattctctcagagaaatatatgactgagaaggat
gaagtaataagagaccttgatgtgcccgagagaattcagatatctgaagaaagcactggt
tctgcttcaacggaacaaatgcttatagaagatgagagctcatggataattaaccaactt
aatgctactatgggatccctgtttggcgattcggattttggcgaacaaaatgacgaggag
cggatggaaaagttgcagaaagctaaaggggatgtattaaagctgttggaactgatgcat
gtgcagaagcatgatattcccttcattgccatgtacaggaaggagttgtgttctgtactg
ctgaaagacccagatcaaaatgaaagtactgttggtgaagagaaggaaaaaggaacacgt
aagctgaagtggcataaggtgctttgggccatcaaggatttggataggaagtggttgctt
ctccaaaagcgaaagaaagctctccaagcatactattttaagcgctatgatgaagagtct
aggaggatttatgacgaaacaagactaaacttgaatcagaagctttatcattcgattgtc
gactctcttaagagtgctgaatccgagcgagaggttgatgatgttgatgcgaagtttaat
ctgcatttccctcctggtgaagttggtgtggatgaaggacaattcaagaggccaaagcgg
aaaacacaatatagtatctgcagcaaggccggcctatgggaagtagcaagtaagataggg
agtagctccgagctctttggtttgcatcttactctagaaaagatgagactggatgagttg
gaggatgctaaggaaactcccgaggaaatagcttcaaattttacatgtgcaatgtttgag
aaccctcaggctgtgctcagaggtgcgaggcacatggctgcggtggaactaagctgtgag
ccgcgtgtaaggaaacatgtgcgcaatatttttatggagaaagctgtagtttcaactagc
cctacccctgatgggaatgtcgctattgattcttttcatcagtttgctgacataaagtgg
ttaagtcaaaagccactgacaaaatttgaagatgctcaatggcttccgatcctaaaggct
gaagaagagaaacttattcaagtttctttgaagttgcctgaggaagatctgaataagtta
ctaggtgaatgcaatgaaaattatctcagtgagggggtaagcaagcctgctaaactctgg
aatgaacaacgcaaaatgatattggaagacacatttaagcaagttcttcctctgatggaa
aaggaagcgcgatctgtattaaatgctagggcaaagaactggcttattatggagtacggg
aagcacttgtgggataaggtgtctgtggcaccttatcaagggaaggaagctgatgttggt
ccagatgatgaagcggcaccaagagtgttggcttgttgttggggacctggaaagccagct
accacttttgtgatgttgggttcatcaggtgaagtactggacgtattgtatgcaggttca
cttagccttcggtctcagagtgttactgaccagcagcggaagaaaaatgatcaacaacgt
gttcttaagttcatgaccgatcatcagccgcatgttgtggttctaggagctgttgcattg
tcttgtacgaagctgaaagaggatattttcgagatcatttttaagatgattgaggaatac
cctagagaaattggtcaagagatggaggagttaaatgttgtttatggggacgaatccctg
ccccgtctttatgagaattcacggatttcgtctgaccagctaccaggccagccagggatt
gtcaggcgtgctgttgcgcttggtcggtaccttcagaatcctttggcaatggttgcaaca
ctttgtggaccagggaaggagatactgtcttggaagctcgactcgttagatcattttctt
acccctgatgagaaatacgatatggttgaacaagtgatggtagatgtcatcaatcaagtt
ggcattgatataaacttggctgcgagtcatgagtggctgttttcccctttacagtttgtc
tctggtcttggtcctagaaaagcagcttcgttgcagagggaattagtaagattaggagtg
atcactactcgtaaggaacttgcacctcttcttaaaaggaaagtgtttatcaacgcagct
ggttttgtacgtgttcgtcgaagtggattagctgctaatagccaccatatcattgatttg
ctggatgatacaagaattcatcccgagtcgtatgaacttgcgaagaggatggcaaaagat
gtttttgatgcagatgatctggatgattcaaatgatgcagacgaagatgcacaagagatg
gcgatagagcatgttagggagaagccaaattttctgaaagcactagatatcaatgaatat
gctcgttcacgcaatgccattgacaagctagagactttgaaggatataaagaatgaattg
ctacatggttttcgagactggcgtactccatacagagaaccggatcaagacgaagagttc
tatatgatttctggtgaaactaaaaataccattgctgaagggagaattgtacaggcaacg
gtgcgcaaggtgcaaccccaaagactcatctgcgtacttgaatctggtttgactgggtgg
gttatgagtgatgactattcggatcacaataggcagattgacttgactgaggaagtgaat
gaaggcgatattgttacctgcaagattaagtcaattcagaagaacaggtaccaggtatat
ctcacttgcaaagaaagtgaattgaaaagagaccgatatagaagctcccaaaaccatgat
ccttactacaaaccagatgagagcagcttacacaccgagaaagagaaggcacgcaaggag
aaggagctcgcgaagaaacattttaaaccaagaatgattgtgcatccccgttttcagaat
atcacagctgatgatgcgtttgagttcctctcagacaaggaaccaggtgaaagcattatc
cgtcccagctccagggggccatcttttttgacattgactctgaaagtttatgatggagtt
tatgccaacaaagacatagttgaaggtggaaaggatcacaaggacatcacaagcttgctc
cgtcttgggaagaccttgaaaataggagatgatacttttgaagacttagatgaggtaatg
gatcgttatgtcgatccattggtaggccatctgaagactatgctgagctatcgcaaattt
aagaagggctctaaagctgaagtagatgatgttttaagggtggagaaatctgagtatcca
atgagaattgtttactgctttggcatttctcatgaacatcctggaaccttcattttatct
tatataaggagtacaaatccacaccatgagtacattggcctgtatcctaagggcttcaaa
ttccgcaaacggacatttgaggacattgatcggcttgtagcatattttcagaaacacatt
gatgatctgcaacatgattctggtccatctataaggtcagttgctgctatggtacccatg
agaagtcctgcgaatggaggttcctctggtggctggggtggctcaaccacaaacagcaat
gatggtggttggagagacaattcaaatttggacagagataaatcttccacacctggttca
agatcaggtagaggtgacttcagaaatggaggaggcagagaccacccaagtggagtgcca
aggcattatggtggtggtgggcgtggaaggggacgtggtagggattcatacaatggtggt
ggtaggggaaacaatgatagacaggattctggtggttggggtggcggaagtagtggtggt
ggcggtagtggttggggaagtggtggctggggttcacctggcggcaccaaagatgctgat
gcaatggataccagtggtaatgatgctgggaacaattctggatggggcggaggatctaaa
aagagcagttcaactcagcatgaaggcggaagtggatggggtggtggtggtggttggtga
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integrated database retrieval system
