Papaver somniferum (opium poppy): 113309734
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Entry
113309734 CDS
T05758
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113309734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113309734
03041 Spliceosome [BR:
psom03041
]
113309734
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
113309734
Spliceosome [BR:
psom03041
]
Complex B
Other components
Prp19-related factors
113309734
Complex C
113309734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_2
TPR_19
ARM_TT21_C
TPR_MalT
NRDE-2
ELYS
PPR
AbiH
Motif
Other DBs
NCBI-GeneID:
113309734
NCBI-ProteinID:
XP_026414029
LinkDB
All DBs
Position
9:146494576..146499261
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AA seq
914 aa
AA seq
DB search
MSIPLELYPSQDDLLYEEEILRNPFSLKLWWRYLIARNESPFKKRSVIYERALKALPGSY
KLWYAYLRERLEIVRNLPVTHSQYESLNNTFERALVTMHKMPKIWVMYLQTLTEQKLVTR
TRRTFDRALCALPVTQHDRIWGPYLYFVSQRGIPIETSLRVYRRYLKFDPTHIEDFIEFL
VNSELWQEAAERLAGVLNDDRFYSIKGKTKHQLWLELCNLLTSHATEVSGLKVDAIIRGG
IRKFTDEVGKLWTSLADYYIRRGLFEKARDVFEEGMTTVVTVRDFSVIFDGYSRFEESVL
AAHMESLDIGDEEENNQDKEEKDERFDTKVSLAKFTYKTLHGFWCNDDNDVDLRLARLEH
LMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTFTEAVRTVDPMKAVGKPHT
LWISFAKLYVEHNDIANARVIFDKAVQVNYKTVDNLASVWCEWAEMELKHKNLEGARELM
RRATAEPSVEVKRRVAADGNEPVQMKLHKSVRLWTLYVDLEEGLGTLESTRAVYERILDL
KIATPQIIINYASLLEEHRYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKSKL
ERARELFEHAVEMAPADNAKPLYLQYAKLEEEHGLAKHAMKVYDQAAKALPDKEKLQMYE
IYIARAAEFFGVPKTREIYEQAIESGLPSEDVKTMCMKYADLEKSLGEIDRARAIYIFSS
QFADPRSDNDFWSRWHDFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPENLMQKDSRL
NLEETVDTLKRAGVPEDEMANLERQLAPAAQDNSTRRLGFVSAGVESQSGVIRTPDGGRK
VVADQDAIELPEDDDDDEEGDKEVEIAQRDVPAAVFGDLAQKVAEEVGEDGDARKRESDS
KLGALERMKRHKKG
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatccctctggagttatatccgagccaagatgatctcctctacgaagaagaaatt
ctcagaaatcccttcagtctaaagctatggtggagatatctaattgctcgcaatgaatct
cccttcaaaaaaaggtcagtaatttatgaacgagctttaaaagctttacctggtagttac
aaactctggtatgcttatctaagagaacgattagagatagtacgaaatcttcctgtaacg
cattctcagtatgagagtttgaacaatacattcgaaagagctttagttactatgcataag
atgccaaagatttgggtaatgtatttgcaaaccctaactgaacagaaactagtaacccgt
actcgtagaacttttgatagagcattatgtgcattaccagtgacccaacatgatagaatt
tggggaccttatctgtattttgtgagtcagagagggattccgattgagacttcacttagg
gtttataggaggtatttgaaattcgatccgactcatattgaagattttattgagtttttg
gtgaattctgagttatggcaagaagctgctgaaagattagctggggttttgaatgatgat
aggttttatagtattaaagggaagacgaaacatcagttgtggcttgaattgtgtaatttg
cttactagtcatgcaacagaggtgtcaggtttgaaagttgatgcaattattagaggtggg
attaggaagtttactgatgaggttggtaagttgtggacatctttggcggattattatatt
cgtagagggttgtttgagaaggcgagggatgtatttgaggagggaatgaccaccgtggta
accgttagagatttcagtgtgatttttgatgggtattctcgatttgaagagagtgtactt
gctgcgcatatggagtcattagatattggtgatgaagaagaaaataatcaggataaggaa
gagaaagatgaacgttttgatactaaagtttcattagctaagtttacatacaagactctt
catgggttttggtgtaatgatgataatgatgttgatttgaggttagctcgactagaacat
cttatggatagaaggcctgagcttgctaacagtgttcttctgcggcaaaatcctcataat
gttgaacaatggcatagaagggttaagctcttcgagggtaatccgacaaagcaaatactg
acgttcacagaagctgtaagaactgtggatcccatgaaagctgttggtaagcctcacact
ctatggatttctttcgccaagctgtatgtagagcacaacgatattgcaaatgcaagagtg
atctttgataaggcagtgcaagttaattacaaaacggtagataatctcgccagtgtttgg
tgtgaatgggccgaaatggaactgaagcacaaaaacttggaaggagctcgggagctaatg
agacgtgcaacagcagagccttcagtggaggttaaacggagagttgctgctgatggtaat
gaaccagtgcagatgaagttgcataaatccgtgaggttgtggaccttgtatgtggatcta
gaggagggtttgggaactctggagtccacccgtgcagtgtatgagcggatactcgatttg
aaaatagctacaccacaaattataataaattatgcaagtttattggaggagcatagatac
ttcgaggatgcgtttaaagtttatgaaagaggagtcaagatatttaaatatccacacgtt
aaggatatttgggtcacatatctctccaaatttgtcaaacgatacggaaaatcaaagttg
gaaagggcaagggagttgtttgagcatgcagttgaaatggcccctgctgataatgcgaag
ccactgtatttgcaatatgcaaaactagaagaggaacacggtcttgctaagcacgcgatg
aaagtctatgaccaagcagcaaaagctttacctgacaaggagaagctgcaaatgtatgag
atttacatagcccgcgccgcagagttttttggtgttcctaaaacaagggagatatatgag
caagcgatagaatctgggttgccaagtgaagatgtcaagactatgtgcatgaaatatgca
gaccttgagaagagtttaggagaaattgatcgcgctcgtgctatatacattttctcatca
cagtttgctgatccacgatcagacaatgatttctggagtagatggcatgattttgaggtg
cagcacgggaatgaggatacattcagagaaatgcttcgaataaagaggagtgtttctgct
agttacagccagactcatttcattctcccagagaatttaatgcagaaggattcaaggttg
aaccttgaggaaactgtggacacactcaaacgtgctggagtccccgaagatgaaatggct
aaccttgagaggcagttagcacctgcagctcaagataacagtactagaagactgggtttt
gtaagtgcaggagttgaatcacaatctggtgtcatccgtacaccagatggtgggaggaag
gttgttgcagaccaggatgcgattgaattacctgaagatgatgatgatgatgaggagggc
gataaagaagttgaaatcgcacaaagagatgtccctgctgcggtgttcggggatttggca
cagaaggtagcagaggaggtgggtgaagatggggatgccagaaagagggagagtgacagc
aaacttggcgcccttgaaagaatgaagaggcacaagaaggggtag
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