Papaver somniferum (opium poppy): 113309887
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Entry
113309887 CDS
T05758
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113309887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113309887
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
113309887
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
zf-RING_2
DZR_2
Motif
Other DBs
NCBI-GeneID:
113309887
NCBI-ProteinID:
XP_026414192
LinkDB
All DBs
Position
9:37873543..37879101
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AA seq
536 aa
AA seq
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MSFDLQLKPSCGGCGSTSDLYGSNCKHMTLCYSCGKRMTQNRAKCFNCGTQITRLIREYN
VRACSTSEKNYFVGRFVSGVPVFSKKKNADNRWALRKQGLVGRQVTDTLREKFKNKPWLL
EDETGQFQYHGHLEGAQCASYYLLMMQGKEFVAIPAGSWYNFNKVAQYRQLTLEEAEEKI
KKRRNASVGYERWMMKIANSGAAAFGEKEKDEKEAQAGGSRGGRKKENDDEDEGNVSDKG
DEDEEEEAQRKNRLRLNKRDGDDDEEGPSGGDLDMDDDDVEKGDDWEHEEIFTDDDEAVG
NDPEEREDLAPEVPAPPEIKQDDDDDDDDDEANEVEGGGLSKSGKELKKLLGRSAGMNDS
DAKADNDDDDEADDDMSMSSALAPKKKDTPKEEPVETPAKAAPSGSTRGTKSTTSKSTKS
NKRSSGDDGKVANSAPLKKVKTEMESKSSAIEGSASALSSAKASADPSPGCVTEEEIRAI
LVQSAPLTTRELVAKFDGRLNSKEEKDAFGAILKQIAIVKRMDKFDGAIYVVLKDK
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgatttgcagttaaagccatcatgtggaggttgtggatcaacttctgatctt
tacggaagcaattgtaagcatatgacactctgctacagctgtggaaaacgaatgactcag
aatcgtgctaagtgtttcaattgcgggactcaaatcactcgcttgattagggagtataat
gttcgtgcatgttctactagtgagaagaattattttgtaggaagatttgtttcaggagtc
ccagtgttttctaagaagaaaaatgctgacaatagatgggcgcttcggaagcaaggactc
gtgggtcgtcaagttacagataccttgcgggagaagttcaagaataaaccttggcttttg
gaggatgagacaggccaatttcagtatcatggacaccttgaaggtgcacaatgtgcaagt
tattatctgttaatgatgcaagggaaggagtttgttgccattcctgctggttcctggtac
aactttaacaaagttgcacagtataggcaactaaccttggaagaagctgaagagaagata
aagaaaaggagaaatgcttctgtgggatatgaaagatggatgatgaaaatagcaaatagt
ggggcagctgcttttggtgaaaaggagaaggatgagaaggaggctcaggctggtggatct
aggggagggcgtaaaaaagaaaatgatgatgaagatgaaggcaatgtctcggataagggg
gacgaggatgaagaagaggaagcacaaaggaaaaatagactcagactcaataagagagat
ggcgatgatgatgaagaaggtccaagtggaggtgatcttgacatggatgacgatgatgtt
gagaagggcgatgactgggaacatgaagaaatatttactgatgatgatgaagctgttggc
aatgaccccgaggaacgagaagatttggctccagaagttcctgctcccccagaaatcaag
caggatgatgatgatgatgatgatgatgatgaggccaatgaagtggagggtggtgggctg
agcaaatctgggaaggagttaaaaaagctgctaggacgttcagctggaatgaatgattca
gatgccaaagctgacaacgatgatgacgatgaagcggatgatgatatgagcatgtcatct
gcattggctccaaaaaagaaggatacacctaaagaagaacctgttgaaactcctgcaaaa
gcagcgccttcaggatctactcgtggaaccaaatctactacatccaaatctacaaagtca
aataaaagatcatctggggatgatggtaaagttgccaatagtgcacctttgaaaaaggtg
aagacggaaatggaatcaaagtcttctgcaatagaggggtctgcatcagctttgtcgtcc
gccaaagcttcagctgacccatctcctggctgtgttaccgaggaagaaatcagggctatc
ttggtacaaagtgctccattaacaacacgagagctcgtggcgaaattcgatggaaggctg
aattcaaaagaggaaaaagatgctttcggtgcaattttgaagcaaattgcaattgtaaaa
aggatggataagttcgatggggccatctacgtggtattaaaggataagtaa
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