Papaver somniferum (opium poppy): 113309995
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Entry
113309995 CDS
T05758
Name
(RefSeq) uncharacterized protein LOC113309995
KO
K06100
symplekin
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113309995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113309995
03019 Messenger RNA biogenesis [BR:
psom03019
]
113309995
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113309995
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
113309995
U7-dependent histone pre-mRNA processing factors
113309995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
Motif
Other DBs
NCBI-GeneID:
113309995
NCBI-ProteinID:
XP_026414316
LinkDB
All DBs
Position
9:complement(183963556..183972319)
Genome browser
AA seq
1312 aa
AA seq
DB search
MVGMTSNAREKTSNVLHLIKYTTDMPLKLQYLDQFKEILLKNGDSLCSEFFPNLVEFQKD
RFSPIRKLLAQIIGEIGSTCTELIPEILPVLISFLEDDTPAVARQAISSGTDLFRSMLEK
VAVKGLSASKLDDSLITSWEWMLKFKDAVCPIAFQKHGTDGIRLLAIKFVEAIVLLYTPD
PNGSSEPPPYQSSEGKIEGFSISWLRGGHPVLNVGDLSMEASQSLGLLLDQLRFPTVKSL
SNLTIIVLINSLSTIANKRPAFYGRILPVLLGLEPSSSVVKGVRVTGAHHALKKAFLSCL
QCTHPGAAPWCERLVGAMREMEDGKLVEHTTAGSLDARTCESQSTEEEKPLIKDAGQESG
RKRSMIQEIGDPEQDDGVTGKRARSSPINTEGSNRERKPNLNQGTLSSNGATSSTGDGET
GTVQQLVAMFGALVAQGDKAAGSLEILLSSISADLLGEVVMANMRRLPSKFEEDEETMSN
MSSLLNVADSNTLASHLMSLVSDIPSLSAVFQQKHLEDEHHEVVTPEIDSDFGSRNDTIA
TIASIIMTNPGSVGHPIRPKYESPTMSSDMHDGGTPESGIPGLDSSVCADAMPEAPDASH
LTNVDSEGESQDKVTNSDGSFLMDYSSTVSVLADKTEEFGLQVPASDTNSVVSTSISSQC
ILPKMSAPVIELTDEQKDQLQKTAFIRIIEAYKQISIAGASDVRFSLLAYLGVEYPLELD
PWKLLQEHISSDYLTYEGHELTLRVLYRLFGEAEKENDFFSSTTATSVYETFLLTVAETL
RDSFPASDKSLSRLFGEVPYLPGPAFKLLESLCSPGSSEITDKETQSGDRVTQGLSAVWS
LILQRPPIRDVCLKIALQSAVHQLEEVRMKAIRLVANKLYPISSIAQQIEDFANEMLLSV
TKRNTTEGLDTEGLTPEVQKDADVEKPSNDQLLSKTGVEEVSSDTHQPCSTSNTATSLIS
EAQRCMSLYFALCTKKRSLFRQIFIIYKSIPKAVTEAVHRHIPILVRTIGSSPEILAIIS
DPPSGSESLLLQVLHILTDGTVPSPDLVYTVKKLYDSKLKDVGILIPVLSYLPKEEVLPI
FPKLVNLPADKFQTALARMLQGSSHSSPILSPAEVLIAIHGIDPEKDGIALKKVMDACNA
CFEQRQVFTQQVLAKVLNQLVEQIPLPLLFMRTVLQAIGAFPALVDFIMEILSRLVTKQI
WKYPKLWVGFLKCALLTQPQSFGVLLQLPAAQLENALSRTAASLKAPLIAHAEQPSIRSS
LPRSTLVVLGLAQDSQVSSQAPKSPSHQTTETSNSVTVAEGATDPKESSTAS
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atggtgggaatgacatcaaatgcgagagaaaagacaagcaatgttcttcacttgatcaaa
tacacgactgatatgcccttgaaactccaatacttggatcaatttaaagagattttgtta
aagaatggtgattctttatgctctgagtttttccctaatcttgtcgaatttcagaaggat
cgtttcagtcctattcgtaaattactcgcacagataattggagaaattggatccacttgt
acggagttgatacctgaaattctaccagttttgatatcatttttggaagatgatacacca
gcagttgctagacaagccatttctagtggtacagatttgtttcgcagtatgcttgagaag
gttgcagtgaagggcttaagtgcaagcaaattggatgattcactaataacatcgtgggaa
tggatgttgaagttcaaagacgcagtatgtcccattgcatttcagaagcatggaactgat
gggattagactgctagcaataaagttcgtagaagcaattgttcttctttacacaccagat
cctaatggctcctcggagcctcccccatatcaatcttctgaaggaaaaatagagggattt
agcatatcatggttgcgtggaggccatccagtgctaaatgttggtgatctatcaatggaa
gccagtcaaagcctagggttattgctcgatcagctgcggtttcccacagtgaaatcacta
agtaatctaacaataattgttctcatcaatagtctttcaaccatcgcaaacaaaaggcct
gcgttttatggccgtattctgccggtattgcttggcttggaaccatcaagttctgtggtc
aaaggggtgcgagttactggtgcacatcatgctttgaaaaaggcattcctatcctgcttg
caatgtacacacccgggtgctgctccatggtgtgagcgattggttggtgccatgagagaa
atggaagatggaaagttggtggagcatacaactgccggaagtttagatgcgagaacatgt
gagtcacaatctactgaggaagagaagcccctaatcaaagatgctggacaagaatcagga
aggaaaagatctatgattcaagaaatcggtgatccagagcaagatgatggggtaactggg
aaacgtgccagatcatcaccaatcaacacagaggggtcaaacagagaaagaaaacctaat
ttgaatcagggtaccctttcttcgaatggagcaacatcctctaccggagatggggagaca
ggaactgtgcagcagcttgtcgctatgtttggcgcattggtggctcaaggtgacaaagct
gctggatcgttggagattcttttatcaagcatctctgcggacttgctaggagaagttgtg
atggctaatatgaggcgccttccttctaaatttgaggaagatgaagaaacaatgtcgaac
atgagttctcttttgaatgtagctgatagtaatacccttgcgtcacatcttatgtcactt
gtatcagacatcccttcactttctgctgtgtttcaacagaaacacttggaggatgaacat
catgaagtggtcacccctgaaatcgattcggattttggtagcagaaatgatactattgca
acaatagcatccatcattatgactaatccaggaagtgttggtcacccgatcaggccaaag
tatgaaagtccaactatgtcatctgacatgcatgatggaggtacacctgagagtggaata
cctggtctcgactccagtgtatgcgctgatgctatgccagaagcaccagatgcttctcat
ttgactaatgttgattcagaaggagaaagtcaggataaagttacaaactcagatgggagt
tttttgatggactattcttcaactgtttctgtgctagctgataagaccgaggaatttggc
ctacaagtacctgcttcggataccaatagtgttgtttctacatcaatatctagccaatgt
atcctcccgaagatgtcagcacctgtaattgaacttactgatgaacaaaaggatcaacta
caaaaaacagctttcattcgcataattgaggcttacaagcaaatatcaatagctggagcc
tctgatgttcggttttctttacttgcttatttgggagttgagtacccattggagttggac
ccctggaagcttttgcaagagcatatatcgtcagattatttaacctacgagggacacgag
ttgacattgcgtgtgctctataggttatttggagaggcagaaaaagaaaatgacttcttt
tcatctacaaccgcgacttcagtatatgagacatttcttctcaccgtggctgagacgctt
cgagattcttttccagcatctgacaaatctctgagtaggttgtttggtgaagtcccttac
ctgccagggccagcatttaaattgttagaatccttgtgttctcctggaagcagcgaaatt
actgacaaggaaacccaaagtggtgatagagttacccaaggcctcagtgctgtgtggagc
ttgattttgcaaagacctccaattcgagatgtctgcttgaaaattgctttacagagtgca
gtccatcagttagaagaagtacggatgaaggcaatacgtctggtagcgaacaagctttat
ccaatatcatccatagctcagcaaattgaagacttcgctaatgaaatgcttctctcggta
acaaaaagaaatactacagagggattggatactgaaggattaacccctgaagtgcaaaag
gatgctgatgtggaaaagccttcaaatgaccagctattgtcaaaaacaggtgtcgaggaa
gtttcctcggatacccatcagccatgctccacctcaaatacggcaacctccttgatctct
gaggctcagcggtgcatgtctctctactttgccctctgtaccaagaaacgttcacttttt
cggcaaatttttattatttacaagagcattccgaaggctgtgactgaggcagttcatcgc
catatcccaatattagttcgcacaataggatcttcacctgagattcttgcaattatttca
gatcccccttctggcagtgagagccttctattgcaggtgttacatatattaacggatggc
acagttccttcaccagatttagtatatactgtcaaaaagttgtatgactcgaaactaaag
gatgttggaattctcattccagtattgtcatatctgccaaaagaggaggtgttaccaatt
tttcccaagcttgtcaaccttccggcagataagttccaaactgcacttgctcgcatgcta
cagggatcatctcattcaagtccaatacttagcccagctgaagtattgattgccattcat
ggaattgatcctgagaaagatgggattgccttgaaaaaggttatggatgcatgcaatgct
tgttttgagcagcgacaagtgtttacccagcaagtgctagcgaaggtgttgaatcagttg
gttgagcagattccgcttcccctgctgttcatgcgcaccgtcttgcaggcaattggtgct
ttcccagctttggtagactttataatggagattctctcgcgacttgtgactaagcagata
tggaaatacccaaagttatgggttgggttcttgaagtgtgctctcctgacgcaacctcag
tcatttggcgtgttacttcagttgcctgcagcacaactggaaaatgcattgagcagaact
gctgcttccctgaaggctcccttgattgcccatgctgaacaaccaagcatccgatcttct
ctacctaggtcaacgctggtggttttaggtcttgcacaagattctcaggtttccagtcag
gcaccaaagagtccaagtcaccaaacgacggaaactagcaactctgtcaccgtggcagag
ggagcgacagaccctaaagaatcatcaacagccagctga
DBGET
integrated database retrieval system
