Papaver somniferum (opium poppy): 113310226
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Entry
113310226 CDS
T05758
Name
(RefSeq) transcription factor bHLH140-like
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
113310226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psom03400
]
113310226
Enzymes [BR:
psom01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
113310226
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
113310226
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
113310226
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
113310226
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
113310226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
AAA_33
Macro
zf-C2HE
HIT
AAA_18
Zeta_toxin
nSTAND3
AAA_19
NB-ARC
CPT
AAA_16
G-alpha
AAA
POT1
RsgA_GTPase
NPHP3_N
AAA_14
Ploopntkinase3
AAA_22
MCM
AAA_28
Motif
Other DBs
NCBI-GeneID:
113310226
NCBI-ProteinID:
XP_026414608
LinkDB
All DBs
Position
9:193045188..193049359
Genome browser
AA seq
744 aa
AA seq
DB search
MDSEMTTKDEEMEEAAPQKAEEEKKKKSKIVMLVGAPGSGKSTFSEDVMKTSSRSWVRVC
QDTIANGKTGTKAQCLKKATDALNDWKSVFIDRCNLDREQRSEFLKLGSPHVDVHAVVLD
LPARLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLNEGFSRITFCLNEKDVEEA
VKTYGALGPLDTLPSGSFGQKNPDAKVQLGIMKFMKKVKPPNNSSKDPVSKQESKETNPS
SKEQDVVAFSAQNTDKNIKADGNSRERPAAGSAMTNDIPTLAFPSISTADFQFNHKKASD
IIIEKVEEFLDKIGNGRLVLVDLTSGSRILNLVKVKAEQKNIDSSKFFTFVGDITQLYTK
GGLHCNVIANAANWRLKPRGGGVNAAIFNAAGPALEIATKEAAGDAGCIEPGSALTVPLP
STSQLHKREGVTHVIHVLGPNMNPQRPDCLNNDYDKGCKILREAYSSLFEGFTSIVRTLT
KEFNKDPSKSVSTVPSSLIDQRSKREGVFESDSNKKYKGPKVEVGVEKKSESTERFTGDG
TIKTWGSWAQSLHRMAMDPEKYNKDVLEISDDVVVLNDLYPKAQKHLLVVARKDGLDRLT
DVRVEHLPLLRAMQNVGVKWAMKLISDEPSLVFRLGYHSDPSMRQLHLHVVSQDFNSTHL
KNKKHWNTFNTAFFLDSVDVMEEIEKCGKAKLNDNESLMSVELRCNKCRSAHPNIPRLKS
HISRCRAPFPSDLLQNGRLVLAPN
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggattctgagatgactacaaaagatgaagaaatggaggaagcagcaccacaaaaagca
gaagaagagaagaagaagaagagtaaaatagtgatgttggtgggcgcacctggtagtgga
aagtctaccttctctgaagatgttatgaaaacctcttcccgttcttgggttcgagtttgc
caggatactattgcaaatggcaaaacgggaacaaaagcacagtgcttaaagaaagcaaca
gatgcattaaacgattggaaaagtgtttttattgatagatgtaatctggatcgagaacag
cgttctgagtttttgaaattagggagtcctcatgttgatgtgcacgctgtggtactcgac
cttcctgcccggctatgtatttctcgctcagtaaaacgtactggtcatgaaggaaatttg
caaggtgggaaagctgctgctgttgtgaaccgaatgctgcagaagaaagaacttcctaaa
ttgaatgaagggttctctcgaatcacattttgtttgaatgagaaagatgttgaagaagct
gttaagacgtatggtgcccttggtcctcttgatacacttccttcgggatctttcggacaa
aagaacccagatgctaaagtccaacttggcataatgaaatttatgaagaaagtaaaacct
cctaataatagctccaaagaccctgtctccaagcaagaatctaaggaaactaatccttct
agtaaagaacaagatgtagttgctttttcggcacaaaatacagataagaacataaaggcg
gatggaaattcaagagagcgccctgccgctggttctgccatgacaaatgatattcctact
ctggcgtttccgtccatttcaactgcagattttcagttcaatcataagaaagcatccgat
atcattattgagaaagttgaggaattcttggataagattggaaatggcagacttgttttg
gtagacttgacttctggatcaagaattctgaatttggtcaaggttaaagcagaacagaaa
aatattgattctagcaagtttttcacttttgttggagatataactcagctttacacaaaa
ggtggtttgcattgcaatgttatcgctaatgcagcgaattggcggttaaaaccaagaggt
ggtggtgtaaatgccgcaatattcaatgctgcaggtccagccctagaaattgcaaccaag
gaagcagctggagatgctggatgtattgaacctgggagtgctttgaccgtccctctacct
tcaacttctcaactgcataaaagagaaggggtaacccatgtcatacatgtccttggtcca
aatatgaatcctcaaagaccagactgtctcaacaatgactatgataaaggatgtaaaatt
ctccgcgaggcttactcatcactttttgaaggtttcacgtctatagtgaggactctaact
aaagaattcaacaaggatccatctaagagtgtctcaacggttccttcttcacttattgac
cagaggagcaagcgcgagggtgtttttgaatctgacagtaataagaagtataaaggaccc
aaggttgaagttggggtggagaagaaatcagagtctactgagaggtttactggtgatgga
acaatcaagacttggggatcgtgggcgcaatctcttcaccgcatggccatggatccagaa
aaatacaacaaggatgtgctcgagatatcagatgacgtggttgtgttaaatgacctttac
cctaaagctcaaaagcaccttcttgttgtagcaaggaaagatggtcttgatcgtcttact
gacgtaagagtggaacaccttccattactaagggcaatgcagaatgttggagtgaagtgg
gcaatgaaattaatttctgatgaaccctcattggtctttcgccttggatatcattcagac
ccgtcaatgcggcaactgcatctccatgttgtcagtcaagatttcaattcaacacatctg
aaaaacaagaaacactggaatacatttaatacagctttttttctcgactcagttgatgta
atggaggaaattgaaaagtgtgggaaggcaaagttaaacgataatgaaagtctgatgtcc
gtagagctgcggtgcaacaagtgtagaagtgctcacccaaacatcccccgtcttaaatcc
catatcagccgttgccgtgcacctttcccttcagatctactccaaaatggtcgtcttgta
ctagcaccaaactga
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