Papaver somniferum (opium poppy): 113310252
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Entry
113310252 CDS
T05758
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113310252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113310252
03012 Translation factors [BR:
psom03012
]
113310252
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113310252
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113310252
Translation factors [BR:
psom03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
113310252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
T2SSE
AAA_19
Rad17
Motif
Other DBs
NCBI-GeneID:
113310252
NCBI-ProteinID:
XP_026414645
LinkDB
All DBs
Position
9:134495759..134501984
Genome browser
AA seq
1032 aa
AA seq
DB search
MSLRVLSINCYHFSFYKTLPFHQGLLVRLSSSSTSTTTVMSYRPNSQGGRRGGGPGGGRG
AGGRRGGGGGGRGRGGGEQRWWDPVWRAERLRQMQAENPVEVLDKNEMWGKMEELINSSE
QELIIKKNYGRDGQQTLSDMAYQLNLYFHGYNKGRILVVSKVPLPMYRADLDERHGSTQK
EIQMSTETEERVQNLLNGSNAVHIDDSSASSSSHGLQTLPSVSADSVPVADIAKEKFSAE
LKDKQDIMKTNDRFKAMRSFREKLPAYKLKSEFLKAVANNQVLVVSGETGCGKTTQLPQF
ILEEEVACLRGGDCNIVCTQPRRISAISVSARISSERGEQLGETVGYQIRLEAKRSAHTR
LLFCTTGILLRQLVQDPSLTGVSHLLVDEIHERGMNEDFLIIILRDLLPRRPDLRLILMS
ATINADMFSKYFGNAPTMHIPGFTFPVEELFLEDVLEKSRLNISSKDRFPGNARGRRKQT
DSKKDPLVELFEEVEIDAHYKNYSASTRCSLAEWSTEKIDLDLVEATIEYVCRHEGGGAI
LVFLTGWDEISKLLDKIKANTLLGNSSKFLVLPLHGSMPTVNQREIFDRPPSGVRKIVLG
TNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPTWISKASAHQRRGRAGRVQPGV
CYRLYPKMIYDAMPQYQLPEILRTPLQELCLHIKSLQLGSIAAFLGKALQPPEPLSVQNA
VELLKTIGALDDAEELTPLGRHLCTLPLEPNIGKMLLMGSIFQCLDPALTIAAALAHRDP
FILPIDRKEEADAAKRSFAGDSCSDHIALLKAFDGWKDAKRSGRERAYCWENFLSPLTLQ
MMEDMRKQFLDLLCDIGFVNKSKGAKAYNIYSDDLEMVSAILCAGLYPNVVQCKRRGKRT
AFYTKEVGKVDIHPASVNAGINSFPLPYMVYSEKVKTTSIYIRDSTNISDYALLLFGGSL
IPTKAGEGIEMLEGYLYFSAAKRVLDLIKKLRNELDKLLVRKIEEPGLDVYAEGKGVVAA
AVELLRSRCIQR
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgtccctacgcgtgttgagtatcaactgttaccacttctctttttataaaacccttccg
tttcatcaaggattactagttcgtttaagctctagctccacttcaaccaccacagtcatg
tcgtatcgtcccaattctcaaggtggtcgtaggggtggcggacctggtggcggacgcggc
gctggtggtcgcagaggcggtggcggcggtggtcgaggccgtggtggtggtgaacagaga
tggtgggatcctgtttggagagctgaacgtcttagacaaatgcaagctgagaatccagtt
gaagtccttgataagaatgaaatgtggggtaagatggaggaattgataaacagtagtgaa
caggagctaattattaagaagaattatgggcgcgatggacagcaaactctttccgatatg
gcttaccagttaaatctttactttcatggttacaataaagggaggatcttggttgtcagc
aaagttccgttgcctatgtacagggcagatcttgatgaacgtcatgggtcaacacagaaa
gagattcaaatgtctacggagactgaagagagagttcaaaatcttttgaatggctcaaat
gcagttcacattgatgattcttctgcgtcttcaagtagtcatgggttgcaaactttgcct
tctgttagtgcggatagtgtaccagttgcggatattgcaaaggagaaatttagtgctgaa
ctcaaggataagcaggatataatgaagacaaatgacagattcaaagcaatgaggtctttc
agggaaaaactacccgcatacaaattgaaatctgaatttttgaaagctgttgcgaataat
caggtgttggtagtctcaggtgagactggttgtgggaaaaccacacagcttccccaattt
attctagaagaagaagtagcatgtctgcgggggggagattgcaacatagtatgcacccaa
ccaagacgtatatcagctatatctgtctcagctcgaatttcttctgaaaggggtgaacaa
cttggagaaacagttggttaccagatccgtttggaagccaaacgctcagcacacacacgg
cttttgttttgcaccactgggatactgctgcgacagttggttcaggatccatctttaacc
ggagtcagccacttactggtggatgagatccatgaaagaggcatgaatgaagattttctc
ataattattttgcgtgaccttcttcctcgtcgcccagatctgcgtcttattctaatgagt
gctaccatcaatgcggatatgttctccaagtactttggaaatgcaccaaccatgcatata
cctggatttacttttccggttgaagagttgtttctagaagatgtgctagagaaatcacgc
ctaaatatcagttcaaaggacaggtttccaggaaatgcacgtggaaggaggaagcaaaca
gattcaaagaaagatcctctggttgagttgtttgaggaagtggaaattgatgctcactac
aaaaattacagcgcaagtactagatgttcccttgcagagtggtccactgaaaagattgac
ctggatcttgtagaagcaacaattgaatatgtgtgtcgccatgaaggcggtggagcaatt
cttgtattcttaactggctgggacgagatatctaaattgttggataaaattaaagcaaac
acccttcttggaaattcaagcaagtttcttgttcttcctctgcatggttcgatgcccacc
gtcaatcagcgtgagatatttgatagacctcccagtggtgtgaggaaaattgttttagga
acaaatattgctgagagtagtatcaccatagatgatgtagtttacgttgtggactgtgga
aaggcgaaggaaaccagttatgatgctctcaacaagctagcttgcctattaccaacttgg
atttcaaaagcctcagcgcatcagagacgaggacgtgctgggcgtgttcaacctggagtt
tgttataggttgtaccctaagatgatctatgatgctatgccccagtatcaattgcctgag
attttgcgaacacctttgcaagaattatgcctccacattaaaagcttacagcttggatcc
attgcagcctttttaggaaaagcacttcaaccaccagagcctctctctgttcaaaatgct
gttgagctactcaaaactattggtgctttagatgatgctgaggaactcacgccacttggt
cgtcatctttgtactctacctttggaaccaaatatcggaaagatgcttcttatggggtct
atctttcagtgcctggatcccgcattaacgattgctgctgctcttgctcatcgtgatcca
tttattcttcctatagataggaaagaagaagctgatgcagcaaaaagatcatttgctggc
gactcttgcagtgaccacattgcacttctgaaagcatttgatggttggaaggatgccaaa
cgttctggaagagagagggcatactgctgggagaatttcttatcacctctaaccttgcag
atgatggaggacatgagaaaacagtttctggacctactgtgtgacattggttttgtgaac
aaatctaagggtgctaaggcttacaacatctacagtgatgatttagagatggtatctgca
attttgtgtgctgggctgtatccaaatgttgtgcaatgtaaacgaagaggaaaaaggaca
gcattttacactaaagaagtaggcaaagttgatattcatccagcatcggttaatgctggg
ataaacagtttccctctgccgtacatggtgtacagtgaaaaagtgaagacaaccagcatt
tacatcagagattctactaatatatcagattatgccctacttctttttggaggcagttta
attccaaccaaggctggggagggaatcgagatgcttgagggatacctctatttctcagct
gcaaaaagggtattagacctcataaagaagttgagaaatgaactcgataagcttcttgtc
cggaagattgaggagccagggctggatgtttatgcagagggtaaaggggttgttgctgca
gccgtcgagctgttgcgcagccgatgcatacaacggtag
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