Papaver somniferum (opium poppy): 113311139
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Entry
113311139 CDS
T05758
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113311139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113311139
03012 Translation factors [BR:
psom03012
]
113311139
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113311139
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113311139
Translation factors [BR:
psom03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
113311139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
T2SSE
ATPase
AAA_19
AAA_16
ABC_tran
Myosin_head
Dicer_dimer
AAA_23
Motif
Other DBs
NCBI-GeneID:
113311139
NCBI-ProteinID:
XP_026415776
LinkDB
All DBs
Position
9:165125305..165132980
Genome browser
AA seq
1157 aa
AA seq
DB search
MYSGLGFILRLRNSVSIISSNSSRLSSRKTALIYLPRLSSSSIVRDVRIENSISFINSVR
SFCGYAVEQFSDDEYECDFENHKASSTIANIDDWKWKLSMLLRSEEDKEIISRDKRDRRD
YEQISNLAKRMGLYCELYEKVVAASKVPLPNYRPDLDERRPQREVVIPLSLQRRVEGLLQ
EHLDRVQLNFGKIGDNSIDSVVSPTENVNPDDPDSFLDGSVMEKVLQRRSSKMRDFQRGW
QESPEGKQMLEFRKSLPAHKEKNRLLTAIARNQVIVISGETGCGKTTQLPQYILESEIES
GRGAFCSIICTQPRRISAMSVAERVSTERGEPLGESVGYKVRLEGVKGKNTHLLFCTSGI
LLRRLLSDRNLDGITHVFVDEIHERGMNEDFLLIVLKDLLPRRPDLRLILMSATLNAELF
SNYFGGAPTIHIPGFTHPVRAHFLEDVLELTGYKLTSFNQVDDYGQDKLWKTQKQLLPRK
KKNQITTLVEEALSRSSFESYSSRARDSLPCWTPDCIGFNLIEAVLCHICRKERPGAVLV
FMTGWEDISCLRDQIKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKAPPNVRKIVLATN
MAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQSGECY
HLYPRCVYDAFAEYQLPELLRTPLNSLCLQIKSLQLGTIGEFLSAALQPPAPLAVQNAVD
FLKMIGALDEKENLSNLGQFLSMLPVDPKLGKMLVMGAIFRCFDPVLTVVAGLSVRDPFL
LPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWKNFLSAQTLQAI
HSLRKQFNFILKDAGLLETESSKNNSLSHNQSLVRAVICSGLFPGIASVVHRESSMSFKT
MDDGQVLLYANSVNARYQTIPYPWLVFREKVKVNTVFIRDSTGVSDSILILFGGSLTHGV
SAGHLKMLEGYIDFFMDPSLAECFWALRKELDKLLQRKLKDPTLDIHKEGKYLMLSVQEL
VSADQCEGRFVFGRESKKVRETINEDRNRVSPHRKDGPNPKSLLQTLLMRAGHSPPKYKV
KHLRTNEFRALVEFKAMQFVGKPKKNKQLAERDAAIEALAWLTHTSDNNRNGGDDSPPDI
TDNMSKLLGKCKKSKKS
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtattcaggattagggttcatcctgagactcaggaactcagtttccatcatatcaagt
aatagtagtagactatcaagtagaaaaactgctttaatttacttacctagattatcatca
tcatcgattgttagagatgtcagaatcgagaatagcatttcgtttataaactccgttagg
agtttttgtggatatgcagttgaacagttctcagatgatgagtatgaatgtgattttgaa
aatcataaggcgtcatccacaatagcaaacatagatgattggaaatggaaacttagcatg
cttctccgcagtgaagaagacaaagaaataatttctagagataaaagagatagacgtgat
tatgagcagatttccaaccttgccaaaaggatgggactttactgtgaactttatgaaaaa
gtggtggctgcaagtaaggtccctttgcccaactacaggccggaccttgatgaaaggaga
ccccaaagagaggtggttatcccactgagtttacaaaggagggttgaaggattacttcag
gaacaccttgacagagtgcaattaaattttggaaagattggggataattcaattgattct
gtggttagtccaactgaaaatgtgaacccagatgatccagactcatttcttgatgggtcc
gtaatggaaaaggttcttcaaaggaggagttcaaaaatgcgtgattttcagagaggttgg
caggagtcgcctgagggtaagcagatgttggagtttagaaaatctcttcctgcacataag
gaaaagaacagactgctcacagcaattgcgcggaatcaggtaatagtgatttctggagag
actggatgtggcaaaaccactcaacttcctcaatacatattagagtccgagattgaatct
ggtcgaggagcattctgtagcatcatatgcactcaacctcgaagaatatctgctatgtct
gttgcagaaagagtttctacagaaagaggcgaacctcttggtgaatcagttggttacaaa
gttcggttagagggagtgaaaggaaaaaatacccatctacttttttgtaccagcggtatt
ctgctcagaaggttactgtctgatcgcaatctcgatggtataacacatgttttcgttgat
gagattcatgagcgtggcatgaatgaagatttcctcttaattgtgttgaaagaccttctt
ccacgtcgtccggacttgagattgattttaatgagtgccaccctcaacgcggagttgttt
tccaattattttggaggtgcgccaactattcacattccaggatttacccatcctgtaaga
gcgcattttctggaagatgtcttggaacttactgggtataaattaacttcattcaaccaa
gttgatgattatggccaagataagttgtggaagactcaaaagcaactattgccaaggaaa
aaaaagaaccagattactactttggttgaggaagctcttagtaggtcgagctttgagagc
tacagttcaagggcccgagattctttgccatgttggacacctgattgtataggctttaac
cttattgaggcggtattatgtcacatttgccggaaagaacgtccaggagcggtattagtg
ttcatgactggctgggaggacattagttgcttgcgggatcaaattaaggcacatcccttg
ttaggagatcccaacagggttttgctgcttacatgccatggttcaatggccacatcggaa
cagaaacttatatttgagaaagcacctccaaatgtccgcaaaatagttcttgctacaaac
atggcagaggccagcattaccatcaatgacatagttttcgttgttgattgtggaaaagct
aaggagacaacatatgatgctttgaacaacacaccttgtttattaccatcatggatatca
caagcttctgctcgtcaaagaagaggtagagctgggcgtgtgcaatcaggagagtgctat
cacctgtatccgagatgcgtatatgatgccttcgctgaataccagcttcctgaactttta
agaactccattgaactctttatgcttgcaaataaaaagtttgcagcttggaactattggg
gagtttttgtcagccgctttacaaccaccagcaccactggctgttcaaaatgcagttgat
ttcctgaagatgattggagccttagatgagaaggagaacttgtcaaatcttggacagttt
ctttcaatgcttccagttgatcccaagcttggcaaaatgcttgttatgggtgctatcttt
cgttgtttcgatcccgttctcaccgtagtggcggggttaagtgttagggacccttttttg
ctcccacaagacaaaaaggatctagcagggaccgcaaagtcaaggttctctgcgaaggac
tatagtgatcatatggctcttgtccgtgcttatgaaggatggaaagatgcggaaagagaa
ggatcagcttatgagtattgctggaagaattttctctctgcccagactcttcaggctatc
cattccctacgaaaacagtttaactttatcttaaaagatgctggtttattagagacagaa
tccagcaagaataatagtttaagccataaccaatctcttgtccgcgctgtcatctgttct
ggcctctttcctggtatagcatctgttgtgcatagagagagctccatgtcttttaagaca
atggatgatggtcaggttctattatatgctaattcggtgaacgcacgctatcagacaatc
ccttacccatggttggtttttcgtgagaaagttaaggtcaacacagtcttcatacgggat
tctactggtgtatctgattcaatactgattctctttggtggttctcttacccatggagtc
tcggctgggcacttgaaaatgttagaaggctatattgatttctttatggatcctagtctg
gcagaatgcttctgggccctaaggaaagaacttgacaagcttcttcaaaggaagctcaaa
gatccaactctagacatccacaaggaaggcaaatatcttatgctttcggtgcaggagctg
gtctcagctgatcaatgtgaaggcaggtttgtgtttggccgcgaaagcaagaaggtaaga
gaaactattaatgaggacaggaacagagttagtccacacaggaaagatgggccgaatcca
aagagcttgcttcagactttattgatgagggcaggtcatagtcctccaaagtacaaggta
aagcatttaaggaccaatgaatttagggcattggtggaattcaaagcgatgcagtttgtt
gggaagccgaaaaagaacaagcaacttgcagaaagagatgctgctatagaggcattggct
tggttaacacacacttctgacaataaccgaaacggaggtgatgattctccacctgacatc
accgataacatgtcaaaacttcttgggaaatgtaaaaagtcgaagaaaagttag
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