Papaver somniferum (opium poppy): 113312324
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Entry
113312324 CDS
T05758
Name
(RefSeq) uncharacterized protein LOC113312324
KO
K06100
symplekin
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113312324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113312324
03019 Messenger RNA biogenesis [BR:
psom03019
]
113312324
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113312324
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
113312324
U7-dependent histone pre-mRNA processing factors
113312324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
113312324
NCBI-ProteinID:
XP_026416874
LinkDB
All DBs
Position
1:201935372..201947311
Genome browser
AA seq
1349 aa
AA seq
DB search
MAGGVTSREQTLSLLSAVKNHGDLAVKLSSLRQAKDILLSVEPSSLVVELFPYIVELQGS
NEVLVRKILLELMEELGLKVMYQSSVFMPVFLTYLKDDASSVVRQSIVSGTNFFCSVLEE
MALQYHQSGKVERWLEELWSWMVKFKDAVCGIALESGPVGTKLLAIKFLEMYVLLFTSDA
EDDETSSKEVKGQNFNISWVVGGHPILDPDLLTLEANRSLGYLLDMLRSAKTLPGCVTIT
VINCLAAIARKRPMHYTDILSALIGFDPHFETPGSHTASIQYSFRTAFLGFLRCTHPCIV
ESRDRLVRALRAMNAGDAADQVIRKIDKIIKNTERASRDARFNKEDQSSNHFLSVAELNK
KRSMLPDVDGAVNTDELPAKRTRYLPVGNAPLPVQNSSGHDGITSNGVSTKVPLMQNELT
PVEQMIAMIAALLAEGERGAKSLEILISQIQPDLMADIVIANMRHLPKNSPPLSSILGNM
PVPSPPGPITTAQVAVPNVPTTTSQQSTLFQSQAVTHFSSTKAVGAPSADLSSASTLPAD
LKRDPRRDPRRLDPRRPPAPAAAVQPLPVKEEITDSRFAFDASVSMGSPVTVQVVPKAEN
AIEPLVSKSDTEFFQSSMTHLDDQHTFKEEIGPVDEEGLTIDPSAEVNNTTSDVPPSDII
MDLEPVLSPEQPDFSVVEPELQDSNMMDFGQNSPGTSAPEETFRELPPVPSYIELTGEEQ
NRLSNLAVGRLIESSRQIHATGCSRTCMELLARLVLQTAADQDIISMVQKHIVSDYEHQK
GHELAMHVLYHLRSVVISCEDEFSSFAESVYEKFLLAVAKSLRDTLPASDKSFSRFLGEV
PLLPDSALKLLEDLCCSEGFDNLGKDVRDGDRVTQGLGAVWSLILGRPLNRDACLTIAFN
CSVHPQEDVRAKAIRLVANKLYRLSYASEKVEEFATNMLLSVIDQRIPDTESSQVGVTES
NPDENVGVQETSTSGSQNSDPGVVPRSELAKDLHPALQTVSNVSLSQAQRCMSLFFALCT
KKPSLLQLVFDVYGRAPKTVKQAVHRHIPNLVRNLGSSFSEFLRIISDPPQGSKNFLMLV
LQVLTEETTPSADLIATVKHLYQTKLKDAAILIPMLSSLPKDEVLPIFPQLVGLPLEKFQ
AALARILQGSAHTGPALTPAEVLVAIHGIHPERDGVALKKITDACTACFEQRTVFTQQVL
AKALNQLVDQTPLPLLFMRTVIQAIDAFPTLVDFMMEILTKLVNKQIWKMPKLWVGFLKC
ASQTQPHSFGVLLQLPPPQLESTLNRHANLRAGLASHANQPSIRSTLPRSTLAVLGLANE
PPPPHAQRSYHPPVLHSETGSSVQGATLT
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaggagttacctcaagagaacagacactttctttactctccgctgtaaaaaac
catggagatttagctgttaaattgtcttctttaagacaagccaaagatattctattgtct
gtggaaccttcttcgttggttgttgagctttttccttatattgttgaacttcagggttct
aatgaagttttggttcggaaaattttattagagttgatggaagagcttgggttgaaggtg
atgtatcagtcatctgtattcatgcccgtttttttgacgtatttgaaagacgatgcttca
tctgttgtacggcagtctatcgttagtggtacaaacttcttttgcagcgttctggaagag
atggcattacagtatcatcaatctggtaaggtggagagatggcttgaagagctgtggagt
tggatggtgaagttcaaggatgccgtctgtggaattgctttggagtctggtcctgtcgga
acaaagttgcttgcgataaagtttttggaaatgtatgttcttcttttcacgtctgatgcc
gaagatgatgaaacatcctctaaagaagtgaagggtcaaaattttaatatctcatgggtg
gttggaggtcatccaatactggatccagatttgctcactttggaagcgaacaggagtctt
ggatatttactggatatgctgcgctcagcaaagacacttcctggttgtgtgacaattact
gtgatcaattgtctcgctgctatagcaaggaaacggccaatgcattacactgatattctt
tcagcattaattgggtttgatccacatttcgagacacctgggagtcatactgcaagtatc
cagtactcttttaggactgcctttctgggtttcttaaggtgtacccacccctgcattgta
gagtcgcgggatagactggttagggctttgcgggcaatgaatgcaggggatgctgctgat
caagttattaggaaaatcgataaaataataaagaatactgaacgtgcgtcacgggatgct
cgatttaacaaggaggatcaatcatcaaaccatttcttatctgttgctgaattgaataag
aaaaggtccatgcttccagatgtggacggtgcagtcaatactgatgagctgcctgcaaaa
aggactcgctatcttcctgtgggaaatgcacccttaccagttcaaaacagttctgggcat
gatggaattacttctaatggagtatctactaaggtaccattaatgcaaaatgagttgact
cctgttgaacaaatgattgccatgattgctgccctgttggcagaaggagaaagaggggcc
aaatcacttgaaattctcatctcgcaaatccagcctgacttgatggctgacattgttata
gctaatatgagacacttgcctaagaactcaccaccattatcaagtatattagggaacatg
ccagtgccttcaccgccaggtccaattacaaccgctcaagttgcagtaccaaatgttcca
actactacttctcagcagtctactctcttccaatcacaagctgtaactcatttttcttcc
acaaaagcagtaggtgcaccatctgctgatttgagctcggcttccactcttcctgcagat
cttaaacgtgatccaagaagggatcctcgtcgcctagatccgcggcgtccaccagcacct
gcagcagccgtgcaaccgctgcctgtgaaggaggagatcaccgattcacggtttgctttt
gatgcttcagtctctatgggtagtcctgtcacagttcaggtggtcccaaaggcagaaaat
gctatagagcctttggtgtctaaaagtgatacggagttctttcaaagttccatgacacac
ttagatgaccaacatacttttaaagaagaaatcgggcctgtagacgaagaaggtctcact
attgatccatctgcagaggttaataatacaacttcagatgttccaccttctgacatcatc
atggatctggaacctgtattatctccagaacaaccagatttctctgtagtggaaccagag
ttgcaggattctaatatgatggattttggtcagaattctccaggcacatctgcacctgaa
gagacatttcgtgagttaccacctgtcccatcatatattgagttgacaggagaagagcag
aaccgcttgagtaacttggcagttgggcgtcttattgaatcaagcagacagatacatgca
acaggctgtagtcggacatgcatggaattacttgcacgcttagttttgcagactgctgct
gatcaagatattatttcaatggtgcaaaagcatatagtttcggattatgagcaccagaag
ggacatgagcttgcaatgcatgtactctatcacctgcgcagtgtggtgatctcctgcgaa
gatgaattctcatcatttgctgagagtgtatacgagaagtttcttctggcagttgccaaa
tctctgcgagatactttgccggcttcagataagtcattcagcagatttcttggtgaagtt
cctcttttgcctgattctgcattgaagctgctggaagacctttgttgttcagaggggttt
gacaacctcgggaaagatgttcgtgatggtgaccgtgtcactcagggccttggtgctgta
tggagcttgatattgggccgtccacttaacagggatgcttgcttgactatagctttcaac
tgctctgttcatccgcaagaagatgtacgtgcaaaggctatccgtctggttgcaaacaaa
ctctatcggcttagctacgcatcagaaaaagttgaagagtttgcaacaaatatgctgttg
tcagttattgatcaacggattccagatacagagtcctcacaagttggtgtcactgaatcg
aaccccgatgaaaatgttggagttcaggaaacgtctactagtggttctcaaaattcagat
cctggagttgttcctaggagtgagcttgcgaaagatctccacccagctctacagactgtt
tctaacgtatcactgtctcaagcccagcggtgcatgtcattattttttgctctatgcaca
aagaaacccagtcttctgcaacttgtgtttgatgtttatgggcgggctccgaagactgtt
aagcaggctgtccatcggcatatcccgaatcttgtgaggaatcttggatcatcattttct
gaatttttgcgaataatttctgatcctccccaaggaagcaaaaattttttgatgctggtg
ttacaagtactgactgaagaaactactccttctgctgacctgattgccactgttaagcat
ctgtatcaaacaaagctaaaggatgctgcgattcttataccgatgttgtcttcacttccc
aaagacgaggtgttgcctatcttcccccagcttgttggtcttcccttggaaaagttccag
gcagcactggctcgtattcttcaggggtcagcacatactggtccagctttaacaccagca
gaagtgttggttgccatccatgggattcacccggaaagagacggagtcgcacttaagaag
ataacagatgcttgcacagcttgttttgagcagcgaacggtctttacacagcaggtgtta
gccaaggccttgaaccagctggttgaccagacacctcttcctttgctattcatgagaaca
gtcattcaagctattgatgcctttccaactctggttgattttatgatggagatactcacc
aaactcgtcaacaaacagatttggaagatgcctaagttgtgggtaggattcttaaaatgt
gcatctcaaacccagccgcattctttcggcgtgttattgcagttacctccaccgcagctt
gagagtacgctaaataggcatgcaaacctcagagctggtcttgcttctcatgccaaccaa
cctagtataagatccacactgccaagatcaactttggccgtcttgggtctcgctaatgag
ccaccaccaccacatgcacaaagatcgtatcacccacctgtgctacactcagaaacaggt
tcttcagttcagggggctacactaacttaa
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