Papaver somniferum (opium poppy): 113312868
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Entry
113312868 CDS
T05758
Name
(RefSeq) eukaryotic initiation factor 4A-3-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03013
Nucleocytoplasmic transport
psom03015
mRNA surveillance pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113312868
09122 Translation
03013 Nucleocytoplasmic transport
113312868
03015 mRNA surveillance pathway
113312868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113312868
03041 Spliceosome [BR:
psom03041
]
113312868
03009 Ribosome biogenesis [BR:
psom03009
]
113312868
03012 Translation factors [BR:
psom03012
]
113312868
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113312868
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
113312868
mRNA cycle factors
Stress granule specific factors
113312868
Spliceosome [BR:
psom03041
]
Complex C
Other components
EJC/TREX
113312868
Ribosome biogenesis [BR:
psom03009
]
Eukaryotic type
90S particles
Helicases
113312868
Translation factors [BR:
psom03012
]
Eukaryotic type
Initiation factors
eIF-4
113312868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
CMS1
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-GeneID:
113312868
NCBI-ProteinID:
XP_026417387
LinkDB
All DBs
Position
1:204085642..204089506
Genome browser
AA seq
410 aa
AA seq
DB search
MATTSEAPRNPRRNNAGGGIDDDKLVFETSDGVQPVSTFDEMGIKNDLLRGIYEYGFEKP
SAIQQRAVMPIIQGRDVIAQAQSGTGKTSMIALTVCQIVDTSNHEVQALILSPTRELATQ
TEKVILAIGDHMKIQAHACIGGQSVGEDIRKLENGVHIVSGTPGRVCDMIKRRSLRTRAI
KLLILDESDEMLSRGFKDQIYDVYRYLPPELQVCLISATLPHEILEITNKFMTEPVRILV
KRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSYN
FTVSSMHGDMPQRERDAIMKEFRDGATRVLITTDVWARGIDVQQVSLVINYDLPNNRELY
IHRIGRSGRFGRKGVAINFVRNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaacttcagaagcaccgagaaaccctagaaggaacaacgctggaggaggaata
gatgatgataaattagtgtttgaaacaagtgatggagtacaaccagttagcaccttcgat
gaaatgggtattaagaatgatttactccgtgggatttacgaatacggatttgaaaaacca
tctgctattcaacaaagagctgttatgcctattatccaaggtcgagatgtgattgctcaa
gctcaatctggtactggaaagacttctatgattgctctaactgtttgtcaaatcgttgat
acttctaatcatgaggttcaagcattgattttgtcaccaacaagagaattagcaacacaa
actgagaaagttatattagccattggtgatcatatgaaaattcaggctcatgcttgtatt
ggaggtcagagtgtcggcgaagacattcgaaaactagagaatggagttcatattgtatct
ggtacaccagggagagtttgtgatatgattaagagaagatcgttgcgtactcgagccatc
aaattattaatacttgatgaatctgatgagatgttgagcagaggttttaaagatcaaatc
tatgacgtttaccgatatcttccaccagaacttcaggtttgtttaatttcggcaacactt
cctcatgaaatactggaaatcactaacaagttcatgacagaacctgtgaggatccttgta
aaacgtgatgaattgacgttggagggtatcaaacaattttttgttgctgttgagaaggaa
gaatggaagtttgatactttgtgcgatctttacgatactctgacgatcactcaagctgtt
attttctgtaacacaaagaggaaggttgattggttaactgagaagatgcgcagctataac
ttcacagtctcttcaatgcatggagacatgcctcagagggagcgagatgcaatcatgaaa
gagttcagagacggggccacccgtgttctgataacaacagatgtatgggctcgtgggatt
gatgttcaacaggtgtccttggttattaattatgaccttccaaacaatcgtgaactttat
attcatcggattggtcgatctggtcgtttcgggcgcaagggtgttgccataaactttgta
cgaaatgatgatatcaggattctcagagacatagagcagtactacagtactcaaattgat
gagatgccgatgaacgtggctgatctaatatag
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