Papaver somniferum (opium poppy): 113313534
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Entry
113313534 CDS
T05758
Name
(RefSeq) protein SMG7-like
KO
K14409
protein SMG7
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113313534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113313534
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
113313534
mRNA cycle factors
Common to processing body (P body) and stress granule
113313534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
zf_DPOE_2
Motif
Other DBs
NCBI-GeneID:
113313534
NCBI-ProteinID:
XP_026418108
LinkDB
All DBs
Position
9:89223166..89230866
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AA seq
980 aa
AA seq
DB search
MMTVPMDNTCASSSRELVQNLFSKNAELENKRRKSAQARLPSDPSAWQQMRENYETIILE
DHAFSEKHEIEFLLWQLHYRRIEELRVHLNAALASTGSTASPGGKGVAHPDRIKKVRTHL
KTFLSEATGFYHDIILKIRAKYGLPLDHFSEDSENHIVLAKNEKRSAEMKKGMLSCHRCF
IYLGDLARYKGLYGEGDSKTRDFGAASSYYLQAALLWPSSGNPHHQLAILASYVGDDFLS
IYRYFRSLGVNSPFSTARDNLIIAFEKNRQSYLQLPGDAKASSVRNIPVRKTRKGRGKAE
TVMQLEDSKVDPHSMKERRCSTAETFKNFCVRFVRLNGILFTRTSLETFEEVFSMVGSDL
HVLLSSGPKDELNFGSDAAGNEIFIVRLVVVLIFTVHNVKRESEGQSYAEILQRSVLLQN
AFTAAFDFVAHILQRCTQLTDPCTSYLLPGILVFVEWLACNLDIAVGSDLEEKQASARSL
FWSHCIAFMNKLISSGSISTDEDGDESCFFNMSTYNEGETGNRLALWEDFELRGFLPLLP
AQLILDFSKKISAGCDGGKEKRARVQRILAAGRVLLNIVKIDQEGVYFDQKSKKFLIGVE
PQTSEDFMCTDLTDMTEYNCTRQEDLVEKIVKQPIGQAYSEGEDDDEVIVFKPAIVEKLV
DVVSPKLISNQVLRPSENGVSTEWPDSAVPFSAPPSNVHLQSSLDVSNQTLSSFAKTVAP
QHLPPTSLGAVIWPVEHHSCLSNGMNNLSIAGSGVVAKEDVQQGFTSFYGQFAGDIPQSV
KLAIGSPCNGDSEAVEAVIPSKYDSIVSSEEITANVSVNSSLAVPVGSKKNPVSRPVRHL
GPPPGFSPVRPKSTTDNMKVGSELKNDISPPDDYTWLDGYQLPSSIKGTLPNSTNNMGNL
FPSVISASNGLGNAVSYPFPGKLDPTMLVQTENWNAKQDYYLQGLNLYQEQHQQIQQASH
LYAPQQNHQGQSMWSGNFFV
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgatgactgtaccgatggataatacgtgtgcttcctcatcaagggagcttgtccaaaat
cttttcagcaagaatgctgagttggagaacaagcgccgcaagtccgctcaagcgagactc
ccttcggatcctagtgcatggcaacagatgcgtgagaattatgaaactataatccttgaa
gaccatgcgttctctgaaaaacatgagatagaatttttactatggcagttgcactatcga
cgaatcgaggagttgagggtgcatttaaatgctgctctagcatctacaggatcaacggca
tctccaggtggtaaaggtgtcgcccatcctgatcggattaagaaagtacgtacccatttg
aaaacgtttctttcagaagcaaccggattctatcatgacataatattgaaaatccgagca
aagtatggactacccctggatcatttctctgaggactcagaaaatcatattgttctggca
aagaatgagaagagatctgctgagatgaaaaaaggaatgctttcctgccaccgctgtttc
atatacttgggggaccttgcgaggtacaaaggactatatggagagggtgactccaaaaca
cgtgattttggagccgcttcaagttactatttacaagctgctttgctttggccttccagt
ggcaacccacaccatcagcttgcgatattggcttcctatgtgggagacgattttctgtct
atttatcggtactttaggagtttgggggtaaacagcccattttcaacagcaagggataac
cttataatcgcatttgaaaagaatcgtcagagttacttgcagctgcctggggatgccaaa
gcctcatcggtgaggaacatacctgttaggaagacaagaaaaggaagagggaaagcagag
acagtgatgcagcttgaagatagtaaagttgatccccattccatgaaggaaagaagatgc
agcactgcagagacgttcaaaaacttctgtgttcgatttgtacggttaaatggcattctt
ttcactcgaacaagcctggaaacatttgaggaggtcttctctatggttggcagcgatctt
catgttcttctttcatcagggccaaaagatgagctgaattttgggtcagatgctgctggc
aatgaaattttcattgttagacttgttgtggttctcatattcacagttcataatgtgaag
agggagagtgaaggacagtcatatgctgagattttacagcgttcggttcttctccagaat
gcatttactgctgcctttgattttgtcgcacacatactccagagatgtacacagttgact
gatccttgtacgagctatcttttacctggtattctggtttttgttgaatggctagcatgt
aacctggatattgctgttggtagtgatttggaggagaagcaagcttcagccagatcgtta
ttttggagtcactgtatagctttcatgaacaagctaatctctagtgggtcaatctctacg
gatgaggatggagatgagagctgttttttcaatatgagcacgtataatgaaggagaaact
gggaacaggcttgctttgtgggaggattttgagctgagaggtttcttacctcttcttcca
gctcaacttattcttgatttctcgaagaagatctctgctggttgtgatggtggcaaggag
aagagagctcgtgttcagcggattcttgccgccggaagagttcttctgaatatagtcaag
attgaccaggaaggagtatattttgatcagaagtcgaaaaaatttcttatcggtgttgaa
cctcaaacatctgaagatttcatgtgcactgatttgactgacatgactgaatataactgt
acgaggcaagaagatctagtggagaaaatagtgaaacaaccaattggtcaagcttattca
gaaggtgaagatgatgatgaagtgattgttttcaagccagctattgttgagaaacttgtc
gatgtggtatctccaaagttaatctccaatcaggtacttcggcccagtgagaatggtgta
agcactgaatggccagattctgcagtacccttttctgctcctccgagtaatgtccaccta
cagagttctttggacgtcagtaaccagacactttcttctttcgctaaaactgttgctccc
cagcatctcccaccgaccagtttgggcgctgtaatttggcctgtggaacatcacagttgt
ctttccaatggaatgaataatttgagcattgctggcagtggggtggtagcgaaagaagat
gtacaacaaggatttacttctttttacggtcagtttgcgggcgatattccccaatctgtc
aagcttgcgattggcagcccttgtaatggtgactctgaagctgttgaagctgttattcca
tctaaatatgattcaatagtgtcttcagaagaaattactgcaaatgtgtcggtgaactca
tcacttgccgttccagtcggttcaaaaaagaatccagtgagtcgacctgttagacatctt
ggtccgccacctggattcagtccggttcgtcctaagtctacaacagacaatatgaaggta
gggtctgagctgaagaatgatatttccccacctgatgattacacctggcttgatggttat
caactaccttcctcaatcaaaggcactctacccaactcgaccaataacatggggaatttg
ttccccagtgttatcagtgccagcaatggcttgggtaatgcagttagctatccttttcct
gggaaactggatccaactatgctggtccaaactgaaaattggaatgccaagcaggattac
tacctgcaaggactgaatctgtaccaagaacagcatcagcagatccagcaagcaagtcat
ctgtatgctcctcagcagaatcaccaaggacagtccatgtggtcaggcaatttctttgtg
tga
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