Papaver somniferum (opium poppy): 113314002
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Entry
113314002 CDS
T05758
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113314002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113314002
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113314002
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113314002
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
113314002
NCBI-ProteinID:
XP_026418555
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Position
9:125746632..125747682
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AA seq
273 aa
AA seq
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MSNVKPIVIREVWASNIVEEFKLIEDAIDEYCFISMDTEFPGIVYRPDGDNKTLFRNRKA
TDHYEILKSNVDALNLIQVGLTLSDSEGNLPDLGTENRYIWEFNFSDFDLENDEYAPDSI
ELLKQQGINFQKNREDGIDSVRFAELVMSSGLVCNESVSWVTFHSAYDFGYLVKVLTSRD
LPNEIDEFLSLLKVFFGAKVYDVKHIMKYCESLYGGLDRVAGVLNVDRAVGKSHQAGSDS
LLTWHAFQKIRDVYFTKVVPEQYAGVLYGLEVY
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgtctaacgtgaagccaatagtgatacgagaagtatgggcgagtaatatcgtagaagaa
tttaagcttattgaagatgcgattgatgaatactgtttcatatcaatggatactgagttt
ccaggtatagtgtatcgacctgatggtgataacaagactttgttccgcaaccggaaagct
actgatcattacgagatcctcaaatcaaacgttgatgcgttgaatcttattcaggttggt
ttaactttatcagattcagaagggaatttgcctgatttaggtactgagaatcgatatatt
tgggaatttaatttcagtgattttgatcttgaaaacgatgaatacgcgcctgattcaatt
gagttgttgaaacaacaagggattaactttcagaagaacagagaagacggaattgactcg
gttagatttgctgaattagttatgtcttctggactcgtttgtaatgagtcggtgagttgg
gtgactttccatagcgcttacgattttggttatctggttaaggtcttgacgagccgtgat
ctacctaacgaaattgatgagtttttgagtcttctaaaagttttctttggggcgaaggtg
tatgatgtgaaacatattatgaaatactgtgagagtttgtatggtggattggatcgggtt
gcgggagtcctcaatgtagatagggctgtcggtaaatcgcatcaagccggatcggatagt
ttgctaacatggcatgcttttcaaaagattagagatgtatactttaccaaagtagtacca
gaacaatatgctggtgtgttgtatggattagaggtgtattaa
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