Papaver somniferum (opium poppy): 113316581
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Entry
113316581 CDS
T05758
Name
(RefSeq) BRCA1-associated RING domain protein 1-like isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113316581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113316581
04121 Ubiquitin system [BR:
psom04121
]
113316581
03036 Chromosome and associated proteins [BR:
psom03036
]
113316581
03400 DNA repair and recombination proteins [BR:
psom03400
]
113316581
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
113316581
Ubiquitin system [BR:
psom04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
113316581
Chromosome and associated proteins [BR:
psom03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
113316581
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
113316581
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MATH_2
BRCT
MATH
BRCT_2
zf-HC5HC2H
RTT107_BRCT_5
zf-HC5HC2H_2
PTCB-BRCT
Basic
Motif
Other DBs
NCBI-GeneID:
113316581
NCBI-ProteinID:
XP_026420531
LinkDB
All DBs
Position
1:221319567..221323261
Genome browser
AA seq
557 aa
AA seq
DB search
MEVENQNPINGNDVASSSTFRWRIENVSKLDEENHFSPIFIIGPHKWRLVAFHRKCNVND
YLSVYVVAVECKNSRYAKFSLAVIDQTNNENTLRKDTEGEVFQFTDDENDWGFDEFIQLK
ELKDANNGYIVNDVCIIEAELFIASTQESKEKLLPDEIMESDEEKDPITLVASTSCLDNA
SAFICAFCQTSKVSEDSGSMLRFANGKEVEEDKVSGPNVIHVHHKCLMWAPQVYYVGETL
KNLELEVVRGSKLKCSCCGLKGAALGCFEQSCKNTYHFPCAFGTSDCRWYNEGYLILCPS
HSDMKFPHEKTKKGNKLAQDNSSAVHRKSWQATASATSKLVLCGSSLSAEEKHLLANFAK
ISGVTISENMKPDVTHLIASTDEKGACRRTFRFLKAILDGKWVLNIDWIKACTEDMDLVD
EEPYEVELDIDGCRDGPRNGRLRASKGAPKLFNGLHFYFTGEFVPLYKKTLEGLVVYAGA
RVLTKNSLLSRSDDEGDCSSTTLIVYDFDEEVSFTVLLEKRREAEDLAKQSRSVVIGHTW
ILESLAALKLEPLPRLT
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggaagtagagaatcagaatccaattaacggcaacgacgtagcttcgtcttccacattc
agatggaggattgagaatgtgtctaaattggatgaggaaaatcatttctctccaattttc
attataggtcctcataaatggcgattagtggcttttcataggaaatgcaacgtcaacgat
tacttatcggtctatgtggttgctgtcgaatgtaagaattcgcgatatgcaaaattcagt
ttggctgtgatagatcaaactaataacgagaacacgttgagaaaagatacagaaggcgag
gtgttccagttcaccgacgatgaaaatgattggggttttgatgagttcatacagttaaag
gaactcaaagatgctaacaatgggtatatcgtgaatgatgtttgtattatagaagctgaa
ttatttatagcctccacacaagaatctaaagagaagctattgcccgatgaaatcatggaa
tccgatgaggagaaagatccaattaccttagtagctagtacttcatgtctggataacgcc
tcagcatttatctgtgcattttgccaaacctctaaagtatcggaggattctgggtcaatg
ttgcgttttgccaatggaaaagaagtagaggaggataaggtatctggaccaaatgtcata
catgttcaccataaatgcttaatgtgggcgcctcaagtgtattatgttggtgagactctt
aagaacttggagctggaggtggtaaggggttctaagctcaaatgtagttgttgcgggtta
aagggcgcagctcttggatgcttcgagcagtcctgcaagaatacatatcattttccttgt
gcattcgggacttccgattgccggtggtataatgaaggttatctaattttatgtcccagc
cattctgatatgaaatttccacatgagaaaacaaaaaagggaaacaagctagcacaggac
aattcttcagcagttcacagaaagagttggcaagcaacagctagtgctactagtaaactg
gttctctgcgggtcttccctttcagcagaagagaagcatctgttggccaactttgctaaa
atatccggtgtaaccatttctgaaaacatgaagccagatgtgacccatttgattgcatct
actgatgagaagggtgcttgccgccgcacttttagattcctcaaggccatcttagatggg
aaatgggttctcaacatagattggatcaaagcatgcacagaagatatggatcttgtcgat
gaagagccttatgaagttgaacttgatattgatggatgtcgtgatgggccacggaatggt
agacttcgagccagtaaaggggcgccaaaactgttcaatggcctacacttctatttcact
ggcgagtttgttcctttatataaaaaaacccttgaaggactagtcgtttatgccggagct
agagtattgacaaaaaattctttactctcacggagtgatgatgaaggagattgttcttca
acgaccttgattgtttacgactttgatgaggaagtgtcatttacggttcttctggaaaag
cgcagagaagcagaagatcttgccaagcaatctagatctgttgttatcgggcatacatgg
atattagaatcactagcagcattaaagttagaaccacttcctcgactgacatga
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