Papaver somniferum (opium poppy): 113317996
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Entry
113317996 CDS
T05758
Name
(RefSeq) protein CHROMATIN REMODELING 35-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113317996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psom03400
]
113317996
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
113317996
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
AAA_16
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
113317996
NCBI-ProteinID:
XP_026421911
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Position
10:complement(40441666..40447222)
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AA seq
991 aa
AA seq
DB search
MEQLRPNPLIRRFDHSTSNNFYSPRNVRRKTFNERVDNTDALFTSKSLTEGKYRYRRGDV
SDIIDYSVPSMTEQLDGDSMYGSVTKVIQAVSAKRCEILNSLRELYPSLLSHPVFSVGPS
PRGSRGTSNVVSQGVIDLDGEDEIHDLGPVSDERMETPAGQIVLHTPGCNNAMVIAGSDD
RYMIGNNKPDYSYDLEVSKMRRDPNYCGIQISTDAQRIGSQVRTPYHVEQRQRRNSTTQN
DNQGIAPVGAQMSTPYDFQLLFLKKPVGEKPAKHVNGSDQRKRNVEKGDKGVCGETVIEK
SKGVYVGVQDDIMSDSGSGGGEDDGLGDIWMEMNLALECSKDASSALGTAMEHIAEEEEE
DECEHSFVLKDDLGYVCRICGVIEKSIEQIFDFQWGKGTKTTRTSYMSQSRTTKDCERAE
GSQFTIANASDQDFGIAEISVHPRHMKQMKPHQIEGFNFLLRNLVCDSPGGCILAHAPGS
GKTFMIISFMQSFLAKYPNARPLVVLPKGILGTWKREFERWQVEEIPLYDLYTSKADSRA
QQLDVLKQWVEHKGILFLGYKQFASIVSNSTSSIAAAACHDILLKVPTILILDEGHTPRN
ETTDVLYSLSQVQTPRKVVLSGTLFQNHVKEVFNILNLVRPKFLKLDTSKAVVRRVMSRV
QIAVRKQVKNSGGDTIFYDLVEETLQNDQDFRRKVTVIQDLREMTGKVLHYYKGDFLDEL
PGLIDLTVLLTLNPKQKHAVEKLRKLDKFKRSSMGSAVYVHPQLKEHAESCATGEKGHIH
EAKIDELLNKVELNDGVKTKFFLTLLALCESAGEKMLVFSQYLLPLKFLERLVVKTRGWS
LGKEIFVISGDSSQDQREISMERFNNSKDAKVFFGSIKACGEGISLVGASRLLILDIHLN
PSVTRQAIGRAFRPGQTKKVYAYRLVAADSPEEEDHHTCFRKELISKMWFEWNEICGYHD
FAMEEVNTKDLDDSFWDSHSLGEDVKALYKR
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggaacaacttcgacctaatccgctcataagaagatttgatcactcgacttctaataat
ttttattctccaagaaatgtgaggagaaaaacatttaatgaaagagttgataataccgac
gctttgtttacttcgaaatcacttacggaagggaaatataggtaccgaaggggtgatgtt
tctgacataatcgactattctgtacctagtatgacggaacagttggatggggatagtatg
tacgggagtgttacgaaagtgattcaagcggtttctgctaagagatgtgagattttgaat
tctctgcgtgagttgtatccatcactgcttagtcatcctgtgttttcagtaggaccgtct
ccgagaggtagcaggggaactagtaatgtggtatctcaaggtgttattgatttggatggt
gaagatgagattcatgatttgggacctgtttctgatgaaagaatggaaacacccgccggt
cagattgttttgcatacgccaggttgtaacaatgcaatggtgatagctggttcagatgac
cgatatatgattggaaataacaaacctgattatagctatgaccttgaggtgtctaagatg
agacgtgatcctaattactgtggtattcagatatctaccgatgcacaacgaataggatct
caagtgcggaccccataccatgtagagcagcggcagagaaggaattctactactcaaaat
gataatcaggggattgcacctgttggagcacagatgagcactccatacgatttccagttg
ctctttctgaagaagccagttggtgaaaaaccagctaaacatgtaaatggaagtgatcag
cgaaagaggaatgttgagaaaggagataaaggtgtttgtggcgaaacagtaattgagaaa
tcaaaaggagtatatgtaggtgtacaagatgatataatgagtgactcgggcagtggtggt
ggtgaagatgatgggcttggtgatatttggatggagatgaatctcgcattagaatgttcc
aaggatgcttcttcagctctgggtactgctatggaacacattgcagaagaggaggaggaa
gacgaatgtgagcattcttttgttctcaaagatgatctgggatacgtctgtaggatatgt
ggggtgattgaaaaaagcattgaacagatatttgacttccagtggggaaagggaaccaag
actaccagaactagttacatgtctcaatctcgtacaacgaaggactgcgaacgagctgaa
ggatctcagtttactattgctaatgcatcggatcaagattttggtatcgctgagatatca
gtgcatccgaggcacatgaagcaaatgaagcctcaccaaattgaaggtttcaatttcttg
cttaggaacttagtgtgcgacagtccaggtggttgcattttggcacatgcaccagggtct
ggaaaaacctttatgatcataagttttatgcaaagcttcctggcaaaatatccgaatgcc
agaccacttgtagtgttgcctaaaggaatcctgggtacttggaagagggagtttgaaaga
tggcaggttgaagaaattcccctgtatgacttgtatacttcaaaagccgatagtcgagca
caacagttggatgtcttaaaacaatgggtggagcacaaaggaatcttgtttcttgggtat
aaacaatttgcaagcatcgtatctaacagtaccagtagcatagctgcagctgcctgccat
gatatactcctcaaggttcctactatacttattttggatgaaggccacacgcctagaaac
gagaccacagatgtgctctactccctttcacaggttcaaactcctcggaaggttgtatta
tctggaaccttattccagaatcatgtgaaagaggttttcaacattttgaatcttgtgcgc
ccaaaatttctgaagttagatacatcaaaggctgttgtgaggagggtcatgagtagggtg
cagattgctgtcaggaagcaggttaagaatagtgggggagacacaattttctatgattta
gttgaagagaccctacaaaatgatcaagatttccgaaggaaagtcacagtgatacaagac
cttcgtgagatgacaggcaaggttttacactactacaaaggtgattttctggatgaactt
ccaggactcattgatctgactgtacttctcactcttaaccccaaacagaaacatgcagta
gaaaaattgagaaaattggataagttcaagagaagttccatggggagcgcagtctatgtt
caccctcagttgaaagaacacgcagagagttgcgccacaggagagaaaggacacattcac
gaggccaagattgatgagcttcttaacaaagtagaactcaatgatggtgtgaaaacaaaa
tttttcttgactttattggcactttgtgaatctgctggtgagaaaatgttagttttcagt
caatatctcctcccactgaagtttttagagaggctagtggtgaaaactagaggctggagc
ctggggaaggaaatatttgtcatatcgggggactcaagccaggaccagagggaaatatca
atggaacgttttaataattccaaggatgcaaaagtcttctttggttcaataaaggcatgt
ggggaaggaatatctctagtgggggcatctcgcttactgatattagatattcatctcaat
ccctcggttacccgacaggcaattggtcgtgcattccgacctggtcaaacaaaaaaagta
tatgcttataggttggtggcagcagactctcccgaggaggaagaccaccatacatgcttt
cggaaggagttaatttcgaaaatgtggtttgagtggaatgagatttgtggttaccatgac
ttcgcgatggaggaagtcaatacaaaggacttggatgattcgttctgggatagccattcc
ttaggtgaagatgtgaaagcattgtacaaaaggtga
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