Papaver somniferum (opium poppy): 113318026
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Entry
113318026 CDS
T05758
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113318026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113318026
03019 Messenger RNA biogenesis [BR:
psom03019
]
113318026
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113318026
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
113318026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
113318026
NCBI-ProteinID:
XP_026421933
LinkDB
All DBs
Position
10:complement(57998125..58004299)
Genome browser
AA seq
855 aa
AA seq
DB search
MPAELIQKLPSPVVDRFRLLLKEREDELRVSDDEDDYSSLSVDDIVRVYDIVLSDLTFNS
KPIITDLTIIAGEQRDCAEGIAEVICNRIAEAPVDQKLPSLYLLDSIVKNIGSAYVRHFA
SRLHEVFFAAYNQVHPNQHPAMRHLFGTWSTVFPPPVLRQIGAELQLSTPTNHQPSGSLA
LTSSGSMSPRPAHGIHVNPKYLEARRQFEHATADVQRGRGISSSLQMFGKKPDFSYGDNK
YDVDDTEIVNPHVRVGKVGPPGIKSSKFQVQSLSPSNNGFGTDNSPERAAPSHLRFEYAP
SRVSGRDGERNDWWSKHGSDVDDQQRPRALIDAYGNYRGKNTLNVERLEVNSFSSEAGTR
KWQNTEEEEYVWEDMSPTLADHSRSGESMPFNPIYGSLQTRLPLGRSTVGPLEPDLRRSN
WPNQPLRSVVDDSAITAEDGISILGPGRGSSSNQGVGGPQAQNAASQTPGPYSSNLHGQF
PQSFPHINREASGRAGQMSFPPTAPPASQRLPFHDANNIFPKEPGHLQPHMFKPLAAREG
FNSLVPAQMSSHVGAQPLNHGHAPQGHNPLLSLPFLNHNPFSSPPIRNMQNNNSFQLHGG
GTVPPLPPGPPPPSHLRPPSQNIGPGASYPPGNSGYTGLISSLMAQGLISLTTPAPDQGS
VGVEFDLDVLKVRHESAIKALYNDLPRQCTTCGLRFKCQEEHSSHMDWHVTRNRMSRNRK
QQPSRKWFVSTSLWLSGAETLGTDAAPGFQPAETVIERKSEEEMAVPADEDQNTCALCGE
PFDDFYSDETEEWMYKGAVYLNALDGSTSGMDRSLLGPIVHAKCRSGSSAVSNEALGQDR
REMLDDSERKRMRVS
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atgccagcggagctgattcaaaagcttccttctccggttgtggatcggtttaggcttcta
ttgaaagaaagggaagatgagttaagggtttctgatgatgaagatgattattcatcactt
tcagttgatgatatcgttcgagtttatgatattgtattatctgatctcacattcaattct
aagcctattattacagacttgaccattattgctggggaacagagggattgtgctgaagga
attgctgaggtgatctgcaatcgaattgctgaggccccagttgatcagaaactaccttcc
ctgtatcttttagacagtattgttaagaacattggcagtgcatacgtgaggcacttcgct
tcccgcctacatgaggtgtttttcgcggcatacaaccaagtccaccctaatcagcatcct
gccatgcgccacctcttcggcacttggtctacagtattccctcctccagtacttcggcaa
attggggcagaattacaactgtcaacccctacaaaccatcaaccatctggctcgcttgca
ctgacttcttcaggatctatgtctcctcgtccagcacatggtatacatgtgaaccccaaa
tatttggaggcaaggcgtcaatttgaacatgccactgcggatgttcaacgtggaagagga
atttcttcaagcctacagatgtttggaaagaaacccgacttcagttatggtgacaacaag
tatgacgttgatgacaccgaaattgtcaacccacatgtcagagttggaaaagttggtcca
cctggaataaagtcttctaaatttcaagttcagtccttatcgccgtcaaataatggattt
ggaacagacaattctccagaaagagcagctccatctcatcttcgatttgaatatgcacct
agcagagtgagtggaagggatggggagagaaatgattggtggagtaaacatgggtcggac
gtagatgatcagcaaagaccaagagctttaattgatgcttatgggaattatagaggtaaa
aacactttaaatgttgaacggctcgaggtaaacagctttagcagtgaggcaggtacgcga
aagtggcaaaacactgaagaagaagagtatgtttgggaggatatgagcccaactttagca
gatcatagtaggagtggtgagtccatgccatttaatcccatttatgggagtttgcagaca
agacttcctttaggaagatccactgttggaccgctggagcctgatcttagaagaagcaac
tggcccaaccagcctctgcggtctgtggtggatgattctgctattaccgctgaggatggc
atctcaatcctggggcctggtcgtggatcatcaagtaaccaaggtgttggcggtcctcaa
gctcagaatgccgcttctcaaactccgggtccttattcttcgaatttacatggccagttt
ccacaatcttttccacatattaatcgggaagcaagtggtagagctggtcagatgtctttt
ccaccaacagctccaccagctagtcagagattaccttttcatgatgctaacaacattttc
ccaaaagaacccggtcatttacagccacacatgttcaaacctcttgcagctcgagaaggt
tttaactccttggtcccagcccagatgtcatctcatgttggggcacagccactgaatcat
ggacatgctccacaaggccacaaccctcttttgagtttaccttttcttaatcacaatcca
ttttcatctccaccaattcgtaacatgcaaaataataactccttccagttacatggtggg
ggaacggtgcctccgttacctccgggtcctcctcctccatcacatctccgcccgccttct
caaaatataggtcctggagcatcctacccgccggggaattcgggttatacgggtctgata
agctctcttatggcacaggggttgatttcactgactacaccagctccagatcagggttct
gttggagttgagtttgatctggacgttctgaaggttagacatgaatctgcaataaaagca
ctttataatgatcttccaagacaatgtacaacatgtggattacgctttaaatgtcaagag
gagcacagtagtcatatggattggcatgtgacaagaaatcgaatgtccaggaaccgtaag
caacaaccttcacgcaagtggtttgtgagtactagtttatggctcagtggtgcagagaca
ttaggaaccgatgctgccccagggttccagcccgctgaaactgttatagagagaaagagt
gaagaagaaatggctgtccctgctgatgaggatcagaatacgtgtgcactatgtggagag
ccttttgatgatttttatagcgatgaaactgaggagtggatgtataaaggtgcagtctat
ttaaatgcccttgacggatcaacatcgggtatggataggtctcttttaggtcctatagtt
catgccaagtgcaggtctggatcttctgcagtttcgaatgaagctttaggacaagacaga
agggaaatgctggatgatagtgaaagaaaaaggatgcgagttagttaa
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