Papaver somniferum (opium poppy): 113318154
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Entry
113318154 CDS
T05758
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03022
Basal transcription factors
psom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113318154
09124 Replication and repair
03420 Nucleotide excision repair
113318154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113318154
03036 Chromosome and associated proteins [BR:
psom03036
]
113318154
03400 DNA repair and recombination proteins [BR:
psom03400
]
113318154
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
113318154
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
113318154
Chromosome and associated proteins [BR:
psom03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
113318154
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
113318154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
AAA_11
SNF2-rel_dom
NAMPT_N
AAA_19
Motif
Other DBs
NCBI-GeneID:
113318154
NCBI-ProteinID:
XP_026422065
LinkDB
All DBs
Position
10:83894284..83899195
Genome browser
AA seq
756 aa
AA seq
DB search
MKFQIEDLTVYFPYDNIYPEQYSYMVELKRTLDAKGHCLLEMPTGTGKTIALLSLITSYS
LSKQSNQLKLLYCTRTVHEMEKTLAELRVLHEYQLKHLGPNARMLALGLSSRKNLCINPT
VNSSNLRDSVDAACRKLTASWVREAAVKSPGIPTCDFFENYERAGSNAILPSGVYTLQDL
RTFGKEKGWCPYYLARHMVQFANVVVYSYQYLLDPKVAGFISKEMQRECVVVFDEAHNID
NVCIEALSVSVRQQTLEGATRNLSKMSHEIDRFKATDANRLRAEYNRLVEGLAQRGNLAL
TDAWLANPALPDDILKEAVPGNIRKAEHFLNVLRRLVQYLRGRLQSENVVKEGPVAFVAS
IYAQTGIDQKMLRFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP
FDERMPHIPDPVLQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFNPVISRS
FTMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMVTAVPDGVVCFFV
SYSYMDGIVNSWNEMGILQDIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLREAHLNLSTDMALHIAREF
LRKMAQPYDKTGVEGKKTLLSEEDLKKMVQSNSNMF
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttcaaatcgaagatttaacagtatatttcccctacgataacatctacccagaa
caatattcttacatggtagaacttaaaagaaccctagatgcaaaaggacattgtctatta
gaaatgccaacaggtaccggtaaaaccattgctttactctctttaatcactagttattcg
ttatcaaaacaatcaaaccaactaaaactactgtattgtacaagaacagttcatgaaatg
gagaaaaccctagctgaattacgtgttttacatgaataccaattgaaacatcttggtcca
aacgcaaggatgttagctttagggttaagttctaggaagaatttatgtattaatccgact
gtgaattcgagtaatttgagggattcagttgatgctgcgtgtaggaaattgactgcaagt
tgggtaagggaggcagccgtgaagagtcctggtattccgacttgtgatttttttgagaat
tatgagagggctggttcgaatgctattctaccatcgggagtttacacgttgcaagatttg
agaacgtttgggaaggagaaaggttggtgtccttattatttggcaagacatatggtgcaa
tttgctaatgtggttgtttatagttatcaatatttgcttgatccaaaagtggctggattc
atatcaaaagagatgcaaagggaatgtgttgttgtgtttgatgaagcgcataatattgat
aatgtgtgtattgaagcacttagtgtgagtgtaaggcagcagacactcgaaggtgctact
aggaatcttagcaagatgtctcatgaaattgacaggttcaaggcaaccgatgccaataga
ttacgcgcagagtacaaccgactcgtggaaggattagcacagagggggaacctagctcta
acagatgcctggctcgcaaatcctgctttgccggatgatatattgaaggaggctgtacca
ggaaacattcgaaaagcagaacattttctgaatgtattgcgaagattggtacagtatttg
cgggggcgtttgcagagtgaaaatgtcgtaaaagagggacctgttgcgtttgttgcttca
atctatgctcagactggaattgaccagaaaatgctgcggttttgttatgatcggctacac
tctctgatgatgactctagaaatcaccgatacagatgaatttctacatatccaaacaata
tgtgattttgctacacttgtggggacttacacccggggcttttcaattataattgaaccc
ttcgatgagcgaatgccacatatacctgatcccgtattgcagcttagctgtcatgacgct
tcgcttgccataaaacctgtatttgatcggtttcaatcagttgtgataacttctggaact
ctgagtcctattgatctctaccctcgtcttctgaatttcaatccagtcatcagtcgaagc
tttacaatgtctatgacaagagattgcatttgtccgatggttcttactcgtgggagtgac
cagcttccagtaagtacaaagttcgacatgaggagtgatccaggtgttgtcaggaattat
ggacgactcttgctggagatggtgactgctgttccagatggagtcgtttgtttttttgtt
agttattcgtatatggatggcatcgtcaatagttggaatgagatgggaatcttacaggat
ataatgcagcataagcttgtcttcattgagactcaggatgttgtggaaactacgttggct
ctggataactatcgaagggcttgtgactgcgggagaggtgctgtctttttttctgttgcc
aggggaaaagtagcggaaggtatagacttcgatcgacattatgggaggcttgtaatcatg
tttggggtaccttttcagtacactctgagcagaatattgcttgcgcgcttagagtatttg
cgggaaacattccagataaaagaaggagattttttgacttttgacgccttgaggcaagca
gctcagtgtgttggtcgagtcattcgttcaaaagcagattatgggatgatgatttttgcc
gacaaaaggtatagccgacatgacaagcggtctaagttacctgggtggatactgtcacat
ttacgagaagcacacctcaacttgagcaccgacatggcattgcatattgcaagagagttc
ctaaggaagatggctcaaccatatgataagactggtgttgaaggcaaaaagaccctgttg
tcagaagaggacttgaagaagatggtgcagagcaactccaatatgttttaa
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integrated database retrieval system
