Papaver somniferum (opium poppy): 113318248
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Entry
113318248 CDS
T05758
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113318248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psom03041
]
113318248
03009 Ribosome biogenesis [BR:
psom03009
]
113318248
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113318248
Spliceosome [BR:
psom03041
]
Complex A
U1 snRNP components
U1 related factors
113318248
Complex B
113318248
Ribosome biogenesis [BR:
psom03009
]
Eukaryotic type
Pre-60S particles
Helicases
113318248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
113318248
NCBI-ProteinID:
XP_026422167
LinkDB
All DBs
Position
10:165795626..165801145
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AA seq
512 aa
AA seq
DB search
MSRYDSRSSDPSSYRDRKSDSGLGGGSGSGGGGGYEGNSRYSSSSKREKVEVSSPKKFDL
DGLTHFEKNFYVESPSVASMTEEEVEKYRIRRQITVEGKDVPKPVKEFTDIGFPEYVMQE
VLKAGFVEPTAIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP
IVLVLAPTRELAVQIQQEVSKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL
IDMLESHHTNLRRVTYLVLDEADRMLDMGFEPQMKKIVAQIRPDRQTLYWSATWPKEVEL
LAKQFLYNSYKVVIGSIDLKANHAIRQIVEIVSESQKYNKLVKLLEDIMDGSRILIFMDT
KKGCDQTTRQLRMDGWPALSIHGDKSQAERDWVLAEFKSGKSPIMTATDVAARGLDVKDV
KYVVNYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIGILEEAGQKVSPD
LASMGRGAPPPPSGLGGFRDRGRGFGGGRTWS
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgttacgatagtaggtcaagcgacccatcttcataccgagaccgaaaaagtgat
tcggggcttggtggtggtagtggtagtggtggtggtggaggatatgaagggaatagtcgt
tattcatcatcaagtaaaagagagaaagtagaagtgagctcaccaaagaagtttgattta
gatggattaacacattttgagaagaatttttatgttgaatcaccttctgttgcatcaatg
actgaggaagaagttgaaaagtataggattaggagacaaattactgttgaaggaaaagat
gttcctaagcctgtcaaggagtttaccgatattgggttccccgaatatgtcatgcaggaa
gtgctgaaggctggctttgttgaacctactgcaattcaatctcaaggatggcctatggct
ttaaagggccgtgatctcattggtatagcggaaacagggtcaggaaagacactagcctat
ctactgccggcgatagttcatgttaatgcacagccatttttagctcctggtgatggtcca
attgttttggtattggccccaacccgtgaacttgctgtccagatacaacaagaagtttca
aagtttggggcatcgtcaaagatcaagagcacctgtatatacggaggggttccaaaggga
cctcaagtccgagatcttcaaaaaggtgtagaaattgttatcgcaactcctggaaggctt
attgatatgttagaatctcatcatacgaacttgagaagggtgacataccttgttttggat
gaggcagatcgaatgctagacatgggttttgaacctcagatgaagaaaattgttgctcag
attcggccagatcgtcaaactttgtactggagtgctacttggccaaaggaggttgaacta
cttgcgaagcaattcctctacaactcctacaaggtggtcattggttccattgacttgaaa
gcaaaccatgctatccgccagatcgtggagattgtgtcagagagtcagaaatataacaaa
ctggtaaaattgttggaggacattatggatggtagtaggattttgatattcatggacacc
aagaaagggtgtgaccaaactacgaggcagcttcggatggatggttggcctgctctctca
atccatggagataagagtcaagcagagagagattgggttctcgcagagttcaagtctgga
aaaagtcccatcatgacagcgacagatgttgcagcacgtggcttagatgtgaaggatgtg
aaatatgtcgtcaactatgactttcctggttcactggaggattatgtccaccgaattggc
cgaacaggtagggctggtgccaaaggaactgcgtacactttcttcactgcagcgaatgcg
agatttgcaaaagaacttattggcatcctcgaggaagctggacagaaggtcagtcctgat
ttggcatcaatggggcgtggggcacctcctcctccatcaggtcttggcggcttccgtgat
cgtggaaggggttttggtggaggacgtacatggagttaa
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