Papaver somniferum (opium poppy): 113318407
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Entry
113318407 CDS
T05758
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113318407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psom03041
]
113318407
Spliceosome [BR:
psom03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
113318407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Gbeta
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
WDR90_beta-prop_4th
PRP4
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_Aladin
Beta-prop_WDR41
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_SCAP
Beta-prop_WDR19_1st
WD40_like
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
113318407
NCBI-ProteinID:
XP_026422352
LinkDB
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Position
10:104444551..104449017
Genome browser
AA seq
585 aa
AA seq
DB search
MEVDEEETTLNTTTSSSFPQPSAVPSHDNLTSTMTTTKLPLLPTLIAPPPPVGVLPIISA
INLPPPFPPQIIPPIAPIPLAPVPHPPVMLPPHPGTAEQNGSDFDSGDEESGPNKSMDYE
ISEESRQVRERQEKIMQDHLLKRRAYALAVPTNDSAVRARLRRLGEPVTLFGEREMERRD
RLRKIMVNLDPEHQDKLFKAHEDEEAANAAAAEDSDGEGPQQYPFYTEGSQELLQARINI
AKYSIVKAASRLERAKRRRDDPDEDFDAEIDWALKQAGSLELDCSEIGDDRPLTGCSFSC
DGEKLATCALNGATRLWSMPRVSRIVAPFKGHTERTTDVAFSPVSSDLLATASADRTAIL
WNTEGRCLRKYEGHLDRLARVAFHPTGKYLATASFDKTWRMWDVETGVELLFQEGHSRSV
YGICFHYDGSLAASCGLDSLARVWDLRSGRSILSLEGHVKPVYGINFSPNGYHLATGGED
NTCRIWDLRKKKSLYIIPAHSNLISQVKFDPQEGYFLATASYDMTAKLWSAQDFKPIKTL
SGHESKVSSLDIVGDGQYIATVSHDRTIKLWGSRSNGKDKAMDID
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggaagtagatgaagaagaaaccaccttgaataccactacttcgtcatcatttccccaa
ccctcagctgtaccctctcatgacaacttaacatccaccatgaccactactaaacttcca
cttcttccaaccttaattgcaccacctcctccagtaggtgttcttccaattatttctgca
attaatctccccccaccttttcctcctcaaatcattcctccaatagctcccattcccctt
gccccggttcctcatcctcctgttatgctcccaccacatccgggaacagctgaacaaaat
ggctctgattttgattccggcgatgaagaatctggtcctaataagtccatggattacgag
atatcagaagagagcagacaggtccgagagcgtcaagaaaaaataatgcaggaccacctt
ttgaaaagaagggcttacgctctagccgtaccaactaatgattcggctgttcgtgctcgt
cttcgtcgtcttggtgaaccagtaactcttttcggcgaaagagagatggaaagaagagat
cgtttaaggaagataatggtgaatttagatcctgaacatcaggataagctttttaaagct
cacgaagatgaggaggctgcaaacgctgctgctgccgaggatagtgatggggaagggcct
caacagtaccctttttacactgaaggatcgcaagagcttttgcaagcgcgaataaacatt
gcgaagtattcgattgtcaaggcagcttcgaggcttgagcgtgcgaaaaggaggagggat
gacccagatgaagattttgatgctgagatagattgggccttgaaacaggctggtagcttg
gaacttgattgtagtgaaataggtgatgatcggccacttactggatgctccttctcttgt
gatggagaaaagcttgcaacctgtgctttaaatggagccactagattatggagcatgcca
cgagtaagtaggattgttgctcctttcaagggtcacacagagcggacaactgatgttgca
ttttctcctgtttcatctgaccttttagcaactgcatctgctgatcgaactgcaatcttg
tggaacactgaagggcgttgtttgagaaaatatgaagggcatcttgatcgacttgctcgt
gtggcgttccacccaacgggtaagtatctggcgacagccagttttgataagacttggaga
atgtgggatgttgaaactggagtcgagctgcttttccaagaaggccacagtaggagtgtt
tatggtatatgctttcactatgatggttctctggctgcatcatgtggccttgattcactt
gctcgggtgtgggatcttcgttctggaaggagcatcctttctttggaaggtcacgtgaaa
ccggtatatggaattaacttctccccaaatggctatcatttagccactggtggagaagat
aatacttgtcggatctgggatctaaggaaaaagaagtctttgtacataataccagctcac
tccaatcttatttcgcaagtcaagtttgacccacaagaaggatattttctggcaactgct
tcatatgatatgacagccaagctatggtcagcacaggattttaagcctataaagactttg
tctggacatgaatcgaaagtctcatcgctggatattgttggagatggacagtatattgca
actgtttcacacgatcggactatcaagctgtggggaagtcgtagcaatggaaaggacaag
gcaatggatattgattag
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