Papaver somniferum (opium poppy): 113318584
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Entry
113318584 CDS
T05758
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03040
Spliceosome
psom04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113318584
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
113318584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psom03041
]
113318584
04121 Ubiquitin system [BR:
psom04121
]
113318584
03400 DNA repair and recombination proteins [BR:
psom03400
]
113318584
Enzymes [BR:
psom01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113318584
Spliceosome [BR:
psom03041
]
Complex B
Other components
Prp19 complex
113318584
Complex C
Prp19-CDC5 complex
113318584
Ubiquitin system [BR:
psom04121
]
Ubiquitin ligases (E3)
U-box type E3
113318584
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
113318584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
Prp19
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_SPT8
NBCH_WD40
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_DCAF12
zf-Nse
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_DCAF4
PEP5_VPS11_N
WD40_like
U-box
PUMA_CC
V_ATPase_I_N
Motif
Other DBs
NCBI-GeneID:
113318584
NCBI-ProteinID:
XP_026422555
LinkDB
All DBs
Position
10:131991419..131996806
Genome browser
AA seq
520 aa
AA seq
DB search
MICAISGEVPEEPVVSKKTGHLFEKRLVERHVEDFGKCPVTGEPLTMDDLMPVKTNKAVK
PRPLQAASIPGLLGMFQIEWDQLMLSHFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARTLLTLAERHVPLPASTTANDSTFNNGKRAAEDVNMDHDGKRSLPGISADIIADL
TDCNTLLSQQRKKRQIPSTLAPVDALERYTQLSSHPLHKTNRPGILSVDIHPSKDIIATG
GVDTNAIVFDRTSGQILSTLSGHSKKVTSVKFVPKDDFFVTASADKTVRVWQGSEDGNYN
CRHVLKDHIAEVQAVTVHATNNYFVSASLDSTWCFYDLTSGSCLTQVGDTSDGDGYTSAA
FHPDGLILGTGTSQANVRIWDVKSQSNVAKFEGHSGPVSAISFSENGYFLATAADDGVKL
WDLRKLRNFRTFAPYDSNTSTNSVDFDHSGSYLAIAGSDIRVYQVANVKSEWNCVKTFPD
LSGTGKATSVKFGPNAQYLTVGSMDRNLRIFGLPGDSAEE
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgatctgcgcaatatctggtgaagttccggaagaacctgttgtttcaaaaaaaactggt
catctttttgagaaacgattggttgagcgtcatgtagaggattttgggaaatgccctgtg
accggggagccacttacaatggatgatcttatgcccgtgaaaacaaataaggcagttaaa
ccgagaccattacaggctgcaagcatccctggattacttggaatgttccaaattgagtgg
gatcagttgatgctatcacattttgcgttggaacaacagttacatacagcaaggcaagag
ctaagtcacgctctctaccagcatgatgctgcttgccgtgttatagcaaggctgaaaaag
gaaagggatgaagcaaggactttgctgactctggcagaaagacatgttccattgccagca
tcaacaactgcaaatgattccacatttaacaacgggaaaagagctgccgaggatgtgaat
atggaccatgatgggaagagatcactccctgggatttcagctgatattattgccgatctt
accgactgtaatactttactgtcacagcagcggaaaaaacgccagattccttccacattg
gctcctgtcgatgcccttgagaggtacacccagctttccagccatccccttcacaaaact
aacagacctggcattttgtccgttgacatacatccatccaaggatatcattgcaaccgga
ggggttgacacaaatgctattgttttcgaccgcacatcagggcagattttgtctacactc
agtggccattcgaagaaggttaccagtgtcaaatttgtacccaaggacgatttctttgtt
actgcttcggcagataagactgttcgtgtgtggcaaggatctgaagatggaaattataac
tgtcgacacgtcttaaaagatcatattgccgaggtgcaagctgtgactgttcatgccacc
aataactacttcgtctctgcttcacttgatagtacatggtgcttttatgaccttacttct
ggatcatgcctcactcaggtcggagatacttcagatggagatggctatacatcagctgcg
tttcatcccgatggtcttatccttggaactggaacgtcacaggctaatgttagaatttgg
gatgtgaaaagtcagtcgaatgttgcgaaatttgaagggcatagtggaccagtttctgcc
atatctttctctgaaaatggctacttcctggcgactgctgctgatgatggggttaaattg
tgggatcttcgaaagttgaggaatttcaggacctttgcgccctatgattcaaatacgtca
actaattctgtggattttgatcacagtggaagttatcttgccattgctggctctgatata
agagtgtaccaagttgcaaatgtgaagtcagaatggaactgtgtcaaaacttttcctgat
ttatccggcacagggaaagcaacatctgtgaagtttggtccaaatgctcagtatttgaca
gttgggtcaatggaccgaaacctccgcatatttgggctgccaggagattctgcagaggag
tag
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