Papaver somniferum (opium poppy): 113318891
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Entry
113318891 CDS
T05758
Name
(RefSeq) protein CLP1 homolog isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113318891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113318891
Enzymes [BR:
psom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
113318891
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
113318891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
FtsK_SpoIIIE
AAA_22
Motif
Other DBs
NCBI-GeneID:
113318891
NCBI-ProteinID:
XP_026422958
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Position
10:complement(22488758..22492527)
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AA seq
441 aa
AA seq
DB search
MAYAVGVGGGGNQGGVGGSIPKRQVKLEKECEFRIEVGETPLRLRLVSGTAEVFGTELPP
EIWLTFHPRLKFAVFTWYGATLEIDGTTETDYTADETPMITYINVHAVLEGRRKRAKASS
TTNPDSSQGPRVMVVGPTDSGKSALSRMLLSWAAKQGWKPTFVDLDIGQGAITIPGCIAA
TPVEMPIDPIEGIPLEMPLVHYFGHTTPSVNVELYKVLVKELSLTLERQFTGNSEARAAG
MVINTMGWVEGVGYELLLQAIDAFSVTVVLVIGQEKLCSMLKDVLKNKPNVDVVKLQKSG
GVVSRNPKLRQKSRSYKIREYFYGIGNELAPHSNIASFSDLSVYRIGGGPQAPRSALPIG
AEPTADPTRLVPVNINHDLLHLVLAISYAKEADEVISSNVAGFIYVTDVDVQRKKITYLA
PAAGDLPSKFLIVGSLTWVET
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcttatgcagtaggtgtaggcggtggtggaaatcaaggaggagtaggaggttcaata
ccaaaaaggcaagtgaagttagagaaggagtgcgagttcaggattgaagtaggagaaaca
cctcttcgtctgagacttgtttctggaactgctgaagtttttggaactgaattacctcca
gaaatttggctcacatttcatcccagactcaaattcgctgtttttacgtggtatggtgcc
acccttgagattgatggaactactgaaactgattatactgcggatgagacgcctatgatt
acctacataaatgttcatgctgtactggagggacgaagaaagcgtgctaaagcatcctca
accactaaccctgattcttcacagggccccagggtgatggttgtaggacccacagattct
gggaagagtgctttgtcgcgtatgcttcttagttgggcagctaaacaaggttggaaaccc
acttttgttgacttggatattggtcagggagctataactattcctggatgcatcgctgct
acccctgttgaaatgcccatagatcccattgaaggaattcctcttgaaatgccccttgtt
cactattttggacacacaacaccaagtgtcaatgtggaactgtacaaagtgcttgtgaag
gagctttctctgacacttgagaggcaatttactggcaattccgaagctcgagctgcaggc
atggttattaacaccatgggatgggtagaaggtgtcggttacgagttgcttcttcaagca
attgacgcattcagtgttactgttgttctagttattggtcaggaaaaactttgcagcatg
cttaaggacgtgttaaagaacaagccgaatgtggatgttgtgaaacttcagaagtcaggt
ggtgttgtgtctcgaaatccgaagcttcggcagaaatccaggagctacaagataagggaa
tacttctacggcattggaaatgaacttgccccacattccaatattgcaagttttagtgat
ctatctgtatatcgaattggtggtggacctcaggcaccgcggtcagctctccccattggt
gcagagcctacagcagatcctacaagactagttcccgtcaacatcaatcatgacctgcta
catttggttcttgccatttcatatgctaaagaagcagatgaagttatctcaagtaatgtc
gcagggttcatctacgtcacagacgttgatgttcaaaggaagaaaataacataccttgct
ccagcagcgggggatctcccaagcaaatttttgatagtaggatctttgacatgggttgag
acttga
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