Papaver somniferum (opium poppy): 113318931
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Entry
113318931 CDS
T05758
Name
(RefSeq) exosome complex component CSL4-like isoform X1
KO
K07573
exosome complex component CSL4
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113318931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113318931
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
113318931
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
113318931
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Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
S1_RRP4
Motif
Other DBs
NCBI-GeneID:
113318931
NCBI-ProteinID:
XP_026422998
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Position
10:complement(110974951..110977614)
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AA seq
203 aa
AA seq
DB search
MVMEVEKEKEEVMVTPGEVLGYSSTLIPGKGAYLHNKTIYASLTGRRVIIPPSSDSPDQK
RSIVEVTGHKAHGAVPEPGSIVIARVTKVMAKMASADIMCVGTKSVKEKFSGVIRKYVDR
QQDVRATEIDKVDMHLSFRHGDIVKALVLSLGDARAYYLSTAKNELGVVSAESIGGATMV
PISYTEMQCPLTGQIEQRKVAKV
NT seq
612 nt
NT seq
+upstream
nt +downstream
nt
atggtgatggaagtagaaaaagagaaggaagaagtaatggtaacaccaggagaagtgttg
ggttattcatcaaccctaatcccaggtaaaggtgcatacttacacaataaaactatatac
gcttctcttactggacgtcgggtcatcatccctccttcatccgattcacctgaccagaag
agatcaattgtggaggttactggtcataaagctcatggtgccgttcctgaacctggatcc
atcgtcattgctagggtaactaaggtgatggctaagatggcttcagctgatattatgtgt
gttggtaccaaatcggtgaaagaaaagtttagcggggttatcagaaagtatgttgacagg
caacaagatgttcgagccacagaaattgataaagtggatatgcacttgtcttttcgccat
ggtgatatagtgaaggctcttgttctctctcttggagatgcacgagcttactatctttct
actgcgaagaatgaactgggtgttgtatctgctgaaagcatcggaggagcaacaatggtt
ccaatcagttatacagagatgcaatgtcctttgacaggccagattgaacaaagaaaagtt
gccaaggtatga
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