Papaver somniferum (opium poppy): 113320603
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Entry
113320603 CDS
T05758
Name
(RefSeq) uncharacterized protein LOC113320603
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113320603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psom03000
]
113320603
03019 Messenger RNA biogenesis [BR:
psom03019
]
113320603
04121 Ubiquitin system [BR:
psom04121
]
113320603
Enzymes [BR:
psom01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113320603
Transcription factors [BR:
psom03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
113320603
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113320603
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113320603
Ubiquitin system [BR:
psom04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
113320603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-UDP
zf-RING_2
Nab2-like_zf-CCCH_
Rtf2
Motif
Other DBs
NCBI-GeneID:
113320603
NCBI-ProteinID:
XP_026424291
LinkDB
All DBs
Position
11:complement(72682744..72689556)
Genome browser
AA seq
1000 aa
AA seq
DB search
MGDEGDKICPLCTEEMDLTDKQLKPCKCGYEICVWCWHNVMDMAEKDDMEGRCPACRTPY
DKEKIVEKTVRFERSMAENNSDRRLKPQKGKPKSSDGRKNLSSVRVIQRNLVYIIGIPSS
LADEDLLQHKEYFGQYGKVMKVSMSRNAGGSIQYSATNTCSVYITYSKEEEAVRCIQSVH
GYVLEDKPLKACFGTTKYCHAWLRNTPCNNPDCLYLHEVGTQEDSFTKDEIISAYTRSRV
QQITGATNNSLRRSGNVLPPPADELINISAPTLEKPIPISVSNNSSSLGKSSPPSVPIVS
PGRSVSLPAAASWGLRASNGRPPTISSDGSTGFTKQNSDGRDDSFPPMVSSTIRAATVHT
EVGKKHSGTEDNHAAHSNGRSGFLENRKQTSARDKTTTDKPEEVARDAFPPLTACPPLSE
NREAGVAKPLKNSKVPNKKASTSVSGKGVSVVIDEATQSLCSGISSIAIGSYTGTGTFKS
NGPVSNHISSGLPGNSLVASEIASSSDEVSVLKGQVPLVRGNEAQEGVQDVNRQTLKIPE
VGGQSSHLPYSSDLLPAINSSSRNSWEGDQSFPLSNHLSVDNTTVRADVADASLLARSNE
LLSSNGYFESKVSSSSNMGRTFGHSRHPLNVELVGYSGSCNDKGSGTLKNSTVDMGESSI
ISNIFSMDSDAWDVSLALPQNLAQLFGENERGSLSGALKVKNSNQSRFSFARQDDFANQV
PGLEPSSGSNGYMGNYSTYQSSMANGDLYTEKRQPGFSSYILEEADIFPGGQPLTSPISR
APTSAPPGFSVPSRATPPGFSSQDRLDTLDTASGNHSFESSMLRNQYWGQPNGNPVSHED
IEFFDPAIMAVGKGLLPNGIINGSIPDIKSTFSPQDDPRIQQLLMQQSITTQQHSRFSDQ
FGNGNRFSSRNEVYSGMHLRNQEQPSFVQSSLQSRNAAAHISNGHWDGGRNEFQSRNDLV
LPELLRNENTLGFNKYFLGHEDLTYRIPSSGDLYNRAFGM
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atgggtgatgaaggagacaagatatgtcctctctgtaccgaggagatggatttgactgat
aagcaattgaagccttgcaaatgtggttacgagatatgcgtgtggtgttggcataatgtc
atggacatggctgagaaggatgatatggagggaagatgtcctgcatgtcgtactccctat
gacaaggaaaaaattgtagagaagacagtgagatttgaaaggtctatggctgagaacaat
tcagacagaagattaaagccacagaaggggaagcctaagtcatctgatggaaggaagaat
cttagcagcgttcgagttattcagaggaacctggtgtacataatcgggataccttctagt
ttagctgatgaggatcttctccagcacaaggagtattttggtcagtatggaaaggttatg
aaggtttctatgtcccgaaatgctggagggtccatacaatactctgctaccaacacttgt
agtgtatatattacttactcaaaagaagaagaggctgtccgatgtatacaatcagtgcat
ggctatgtcctagaagataaacccttaaaagcgtgctttggaaccacaaaatattgtcat
gcatggttaagaaatacgccttgtaacaatcctgattgtctgtatctgcatgaagttggc
acccaagaagatagttttacgaaagatgaaataatttcagcatataccaggagtagagtt
caacaaataactggcgctacaaacaattctctgcgacgttcagggaatgtgttgcctcct
ccagcagacgagctaatcaatatcagtgcacctactttagaaaagcctatacccataagt
gtctcaaataattcttcaagtcttggtaaatcttcgccccccagtgtgccaattgtgtcc
cctggaagatctgtctctcttccagcagcagcttcatggggattgcgtgcttcaaatgga
cgtccacctaccatatcgtcagatggttcaactgggtttactaaacaaaactctgatggg
cgtgatgattcgttccctcccatggtttcaagcacaattagggctgctacagtgcatacc
gaagtaggaaagaaacatagtggcacagaagataatcatgcggcacattctaatggtaga
tccgggttcctggaaaatcgcaaacaaacttcagctagagataaaactacaactgataaa
ccagaggaggttgcccgagatgcatttcctcctcttacagcatgtccacctttatctgag
aacagggaagcaggcgttgcaaagccattaaaaaattctaaagtacctaataaaaaagct
agtacatcggtttcaggcaagggtgtgagtgttgttattgatgaagcaactcagagttta
tgttctgggatttcttctatagccataggtagctacactggcacaggaacttttaaatct
aatggtccagtctctaatcacatttcatctggtttacctggtaattcacttgttgctagt
gaaattgccagctcatctgatgaagtgtctgttttaaaaggacaagtaccattagttcgg
ggtaatgaagctcaagaaggcgtgcaagatgtgaataggcaaacattgaagattccagaa
gttggtgggcagtcatcacatttgccttactcatctgatcttcttcctgctataaacagt
tccagcaggaacagctgggaaggcgaccagagtttccctttgagcaatcatctcagtgtt
gataatacaactgtgcgggcagatgtcgctgatgcttcacttctggctagatcgaatgag
ctgttatcatctaatgggtatttcgagagcaaggtcagcagttcttctaatatgggaagg
acttttggtcattccagacatccattgaatgttgaacttgtcggttactcaggaagttgt
aatgataaaggatccggtactttgaaaaatagtactgtggatatgggcgaaagtagcata
atctcaaatattttttcaatggactctgacgcatgggatgtttcattggcattacctcag
aatcttgctcaattgtttggtgaaaatgagcgtggctctctctctggtgcattgaaagtg
aaaaacagcaaccaatctaggttttcatttgcaagacaggatgattttgcaaaccaagta
cctggcttggagccttcttcaggcagcaatggttatatgggtaactactctacttatcag
agttccatggcaaacggagacttgtacaccgaaaagcgtcaaccaggtttttcatcctat
attttggaggaagcagacatctttcccggtggacaaccactcacttcaccaatttcaaga
gctccaacatctgcacctcctgggttttcggttcccagcagagcgacacctccaggattt
tcttctcaagataggctggacactctagatactgcttctggaaatcattcttttgaaagt
tcaatgttaagaaatcagtattggggtcagccaaatggaaaccctgtcagtcatgaagac
attgaattttttgaccctgcaataatggcagtcggcaaagggctgctccctaatgggatt
attaatggctcaattccagatataaagtcaaccttctctcctcaggatgatcctagaatt
cagcagctattaatgcagcaatccataactacgcagcagcattctagattttcggatcaa
tttgggaacggcaatagattttcttctcgtaatgaggtctatagtggtatgcatttgaga
aatcaagagcaaccctcctttgtgcagtcatctttacagtctagaaatgctgctgctcat
atatctaatggtcattgggatggaggtcggaatgagtttcaaagcagaaatgaccttgtc
ctgccagagcttcttagaaatgagaatacacttggatttaacaagtattttcttggtcac
gaggatctgacgtatcgtattccaagttcaggtgatctatacaacagagcatttggaatg
taa
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