Papaver somniferum (opium poppy): 113321400
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Entry
113321400 CDS
T05758
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113321400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113321400
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113321400
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113321400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
113321400
NCBI-ProteinID:
XP_026425091
LinkDB
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Position
11:complement(1517645..1522430)
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AA seq
624 aa
AA seq
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MSGILNSSLSGSNSNLPESTSRPFATSFAGQSAAPSPIYNHSGTMQGMQNMNGNFSVQNM
SSTLTARSAAGNGAPSSGMQQPIGSLSSGRYPSNNIPVGLSQISHGGSQGHPGIPNRGGL
VSPILGNAGARMTSSMGNISIGGNNGRNISSGGMSVSGLASRLNMTVNTGSGNLAAQGPN
RYMGGMLQQATPQVMSMLGNSYPSAGGQLSQNQIQGGNNFRPTGMLSDMNSNENSPFDMM
NDFPQLNGRPSSAGGPQGQGSMRKLGAAVSSVVQQNQEFSIQNEDFPALPGFKGGNADYG
MDLHQKEQFHDSSGSMMQSQHFPMGRSGGFSFSESYPSSRTQQQHASSVSSGGLSYTPSN
NQDLQLHGSDLFPSSHSPYHSQVQSSGQPSMGLRNSSNSVSGVGSYDQLLQNFQQQQQNQ
SQFRLSQMPSASRLYRDRNMKSTHVSQASPDQYGLLGLLSVIRISDKPVSSLYLGIDLTS
LGLNLNAVENLHKTFGSPWSDEPAKGDPEYTVPECYYAKQPPVLQQSYFKKFQLETLFYI
FYSMPRDEAQLYAANELYNRGWFFHRDLRIWFFRMPNLEPLAKTETYERGSYHCFDSTTW
ETVRKDNFVLQYKSIESRPVIPQH
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcatacttaattcatcgcttagcggatcaaattcaaaccttccggagtccaca
tcacggccatttgcaacgtcttttgctggccaatctgctgcaccttctcccatttataat
cattctggtacaatgcaaggaatgcaaaatatgaatgggaacttcagtgttcagaacatg
tcaagcactcttacagctagaagtgcagcaggaaatggtgctccttctagtggtatgcaa
cagcctattgggagcctctccagcggacgatatccttctaataatattccagttggtctc
tcacagatatctcatggtggctcacaaggacatccggggatccctaatagaggaggattg
gtatctccaattttgggtaatgcaggtgctcgaatgactagctcaatgggaaatatctct
attggaggtaacaatggacggaatatcagttccggcggaatgtctgtttctgggcttgca
tctcgcctcaatatgactgtgaatactggttctggaaatttggctgcacaaggacccaac
agatatatgggaggtatgcttcaacaagcaaccccgcaggttatgtccatgctcggaaac
tcttatccttcagctggtgggcaactatctcaaaaccagatccaaggagggaataacttt
aggccgacgggaatgttaagtgatatgaattcaaatgaaaattccccgtttgacatgatg
aatgatttccctcagttgaatggacgtcctagttctgcaggagggcctcaaggacaaggt
tcgatgcgaaagctaggtgctgctgttagttcagttgtccaacaaaatcaagaatttagc
attcaaaatgaagattttccagcgttgcctggatttaaaggtggaaatgctgattatggt
atggatttgcatcagaaagaacaatttcacgatagttcgggatcaatgatgcaatctcag
cacttccctatggggagatctgggggattcagtttctcagaatcgtatccatcatcacga
acccaacaacagcatgcttcatcagtaagtagcggtgggctttcttacacaccctctaac
aatcaagatcttcagttacatggctctgatcttttcccatcttctcattcaccatatcac
tcacaggttcagtctagtggacaaccaagcatgggattaagaaactcctcaaattcggta
tctggagtaggatcatatgaccagcttcttcagaattttcaacagcaacagcaaaatcaa
tctcagttccgtctatcgcagatgccatctgcaagccgactatatagagaccgcaacatg
aaatcaacacatgtttctcaagcttctcctgaccaatacgggctgcttggattattaagt
gtcatacggattagtgataaacccgtatcatctctttacctcggcattgatttgacaagt
ctaggtctcaatttgaatgcagtagaaaacttgcacaaaacatttggttctccatggtct
gatgaacctgcaaagggggaccctgagtatacagtacctgagtgctattatgcaaaacaa
ccacctgtgctacaacaatcatatttcaaaaagttccagttggagactctgttttatatc
ttctacagcatgccaagagatgaggcgcagttgtatgcggccaacgaattgtataacagg
ggctggttcttccacagagatctacggatatggtttttcagaatgccaaatttggaaccg
ctggcaaagacagaaacctatgagagaggttcctaccattgtttcgattcaaccacatgg
gaaacagttcgcaaggataactttgttcttcagtacaagtcaattgagagtagacctgtg
attccgcaacactga
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