Papaver somniferum (opium poppy): 113321479
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Entry
113321479 CDS
T05758
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113321479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113321479
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113321479
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113321479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
113321479
NCBI-ProteinID:
XP_026425177
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All DBs
Position
11:complement(35653922..35663851)
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AA seq
890 aa
AA seq
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MGASRKLQGEIDRVLKKVHEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALLDARKIIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPKEKAKLETREWLNTVVGELESQIDSFEADIEGLSVKKGKARPPRLTHLETSIVRHKA
HIMKLELILRLLDNDELSPEDVNDVRDFIEDYVERNQDDFEEFSEVDDLYSSLDLDKVEL
LEDLVTIPPGLVKGVGTASAVLSMKPSVTSSPTQVSGSSTPDQVEETASQDSNSDIVPRT
PPSKNGILSQSALTTPTGTNAAAATSAMAARSAVGGSTVSSVFSAPVSARGVGDTSAAVG
SSSPISVKEEEDSNFSSHRSSPVLADITLGRSMGKGTVGGGTSTQSLNGGHLSTSSVIPS
SPGSLGGAPTAMDMPKRNISGADDRGSTTTVQPLVSPLSNRILLPQVSKSSEGAVLVDSA
NATEPTMIGGKVFSPQWRPHAGSSFQNPNEVGQVRARTEIAPDQRDKYLQRFQQVQQQGH
SNLIGVPHLSGGNQFFPQQQNTLLQQFNSQSQSLSPQVGLGLGVQTSGLNSVTSASVQQP
NSVLQQQSTQHSLMSAGLKDSDFSHVKVEDQQQQQNSSDHSSMEPSMSSGFNKNLMNEDD
LKTQYAADTPAGASSSLSEATQTPRDIDLSPGQPLQSNQPSGSLGVIGRRSVSDLGAIGD
SLSASTANSGGSHDQLYNLQMLEAAYYKLPQPKDSERAKTYIPRHPVATPSSYPQVQSPI
VDNPAFWERLGLETLGTDTLFFAFYYQQNTYQQYLAARELKKQSWRYHRKYNTWFQRHEE
PKVANDEYEQGTYVYFDFHILNDEKQHGWCQRIKTEFTFEYSYLEDELVV
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgggagctagtagaaaacttcaaggagaaatcgatcgagtattgaaaaaagttcacgaa
ggtgttgaggtgttcgatagtatatggaacaaggtttacgatactgataatgcaaatcaa
aaagagaagtttgaggcggatttgaagaaggagattaagaaacttcagagatatagagat
caaattaagacatggattcagtcgagtgagatcaaggataaaaaggttagtgcctcttat
gagcaggctctgttggatgctcgcaagattatcgagcgtgaaatggaaagattcaaagtt
tgcgaaaaagaaaccaagacaaaagccttctctaaagaagggttagggcaacaacccaaa
acagatccgaaagagaaggcgaaattggagactagggaatggttaaacactgtggtagga
gagctggagtcccaaattgatagttttgaggctgatattgagggtctctcagtaaaaaag
ggaaaagcaagacctccaagactgacacatttggagacatcaattgttcggcataaagct
cacataatgaagttagagttgatactgagacttcttgacaatgatgaattgagtccagag
gatgttaatgatgtgagagatttcatagaagactacgtggaacgtaatcaggatgatttt
gaagaattcagcgaagttgatgatctttacagctctttagacttagacaaggtggaattg
cttgaagacctggttacaatacctcctggtcttgttaagggtgtcggtaccgcaagtgca
gtattaagtatgaagccttctgtaacttcttcaccaactcaagtatcgggttcttccact
ccggaccaagttgaagaaacggcttcccaggacagtaattctgatatagttccaagaact
ccaccttccaagaatggaatattaagtcagtcggcattgaccacaccaacaggaaccaat
gcagctgctgctactagcgctatggcagcacgttcagcagtcggtggttcaacggtttct
tcagtcttttctgctccagtatctgcacgaggtgttggtgatacttctgctgctgttggt
tcatcatctcctatttcagtgaaagaggaagaggactcaaacttttctagccaccggtct
tctccagttcttgctgatattacactcggaaggagtatgggtaaagggactgtgggtgga
ggtacatcgactcaatcacttaatggtggccatctgagtaccagcagtgtgatccccagc
agccctggatcgcttgggggagctcctactgccatggatatgccaaaaagaaacatttca
ggagccgacgatagaggaagcactactactgtacaacctttggtttcacctctaagtaac
agaattctcttgccgcaagtttccaaatctagtgagggagctgttttagttgattcagct
aatgctactgagccgacaatgataggtggaaaagttttctctccacagtggagacctcac
gctggaagctcttttcagaatccaaatgaagtgggacaggttcgtgcaagaactgagatt
gctcctgatcaaagagacaaatatttgcagcggttccaacaggtgcagcagcaaggacat
agtaacctcattggcgtgcctcatttaagtggaggaaatcagttctttccacagcagcaa
aacactcttttacagcagttcaactctcaaagccaatcgttatcgcctcaagttggatta
ggacttggagttcagacgtcgggtctgaatagcgtaacatctgcttctgtacagcagcca
aattctgtcctccaacagcagtctactcagcattctttgatgtcagctgggttgaaagat
tcagattttagccatgtcaaagttgaggaccagcaacaacagcagaattcatctgatcat
tcaagcatggaaccttccatgagttctgggtttaacaagaatctcatgaatgaggatgat
ctgaagacacaatatgcagcagatactcctgctggagcgtctagctctttgtcagaagct
acccaaactccgagagacattgatctctctcctggacaacctttacagtccaatcaacct
tctggcagcctgggtgtcataggccgacgaagtgtttctgatcttggcgccatcggtgat
agcctaagtgcgtcaacagcaaattctggcggatcgcatgatcagttgtataatttgcag
atgcttgaagctgcttattacaagcttcctcaacccaaggactcggaacgtgcaaagact
tacattccaagacatcctgtggccaccccatcaagctatcctcaggtgcaatcacccatt
gtcgacaacccagccttttgggaacgattgggtcttgagacattaggaacagatactttg
ttctttgccttttattatcagcagaatacttatcagcaatacttggctgcaagagaattg
aaaaagcagtcctggagataccatagaaaatataatacatggtttcaaaggcacgaggag
cccaaagttgcaaacgatgagtatgaacaggggacatatgtttactttgatttccatatt
ctcaacgacgaaaagcaacatggatggtgccagagaatcaagactgagttcaccttcgag
tacagttatctcgaagacgaactggttgtatag
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