Papaver somniferum (opium poppy): 113321712
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Entry
113321712 CDS
T05758
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113321712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113321712
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
113321712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Bep_C_terminal
DUF4794
Motif
Other DBs
NCBI-GeneID:
113321712
NCBI-ProteinID:
XP_026425401
LinkDB
All DBs
Position
11:complement(36906500..36914618)
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AA seq
900 aa
AA seq
DB search
MESDSEKINKQKAEALQALINGPLSSSISKLSASTKAIPHNEDFHFFNNFEEFKKPVKDM
SEKSKSMLIAIGDLNYPLDKPIPFPDGLDECNDWLTDVTDDIYERFDVSIDEFKSLRNKE
EEMGRKIISSDDGFQLVCRRNKKGGGGGFIGNEEESSKNLSSPSLSVKVASKDKKTTGAK
PKVPFHIPTVKRPQDEYNIIVNNINQPFEHVWLTRSEDGCTFIHPLENLSVLDFVDKNIG
DTEPEKPLPLESTPFTLIEDVKQLKELSKKLRDVNEFAVDLEHNQYRSFQGMTCLIQIST
RTEDFIVDTLKLRVHVGPYLREVFKDPSKKKVMHGADRDILWLQRDFGIYVCNLFDTGQA
SRVLELERNSLEFLLNHFCGVAANKEYQNAEWRLRPLPDEMVRYAREDTHYLLHIFDIMK
GMLLSASTSSENGEDLLLEVYNRSCAICMQLYEKELLTDTSYLYIYGLQDADLNSQQLAI
VAGLCEWRDAVARMEDESTGFILPNKALIEIARQKPDSASKLRRLVKSKHPYIEHNLGTV
VAIIKNALQNAPAFEIAAEQLKERALTASKQHTEVVPDEFEASPTSEDRTEMMESPPAHP
EMINTDVSNSVNSSVLRDKQVAAELSNGNNTLHGVSVEQSSCGIGDERKKENTGTGSCLF
PTKAVPEVTVQVLKKPNRAFGALFGNSGSKRKLDPNSKDKAQMKVEQIKSSVTLPFHSFM
GNDQSKPLVEVSTKSSDFSLPDEQIPLGNEVAKVDDIIPLESGQGINGDGAESESDKDEQ
PMSLSELSSNFKKCFQPKQELRRNKVEKSLESEEVSLNFEPFNYEAARKHLKFGKDQEEK
QEAEEGDEQGPKSPKESKGRRKKPVFTRLPTEEEAKAFQQQARRRQAFPQSGNRSSTFRS
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtgattcagagaaaatcaataagcaaaaggcagaagctttacaagctttgatt
aatggtccgttatcatcttctatatctaagctatctgcttctaccaaagctattccgcat
aatgaagattttcattttttcaataactttgaggaatttaaaaaaccagtcaaagatatg
tctgagaaatctaaatctatgttgattgctattggtgatttgaattatccattagataaa
cctattccgtttcctgatggtttagatgaatgtaatgattggttaactgatgtaacagat
gatatttatgaaagatttgatgtttcaattgatgagtttaagagtttaagaaataaggaa
gaggaaatgggtaggaagattattagttctgatgatgggtttcagttggtttgtaggaga
aacaagaaaggaggaggaggagggtttattggtaatgaagaagagagtagtaagaatttg
agttctccttcattgtctgtgaaggtggcatcaaaagataagaaaacaactggggcaaaa
ccaaaagtcccttttcatatacctacagtgaagcggccacaagatgagtataatatcatt
gttaacaatataaaccagccatttgagcatgtttggttgactaggagtgaagatggctgc
acgtttattcatcccctggaaaatctttctgtgctggattttgttgataaaaacatcggt
gacaccgaacccgaaaaacctctgccactagaaagcactccatttacgctgatagaggat
gttaaacagctgaaagaactgtccaagaagctgcgtgatgtgaatgaatttgcggttgat
ttggagcataaccagtataggtccttccaaggaatgacttgcttgattcagatttctact
agaacagaggattttatagtagatacattaaagctccgtgtacatgttggtccataccta
agggaagtgttcaaagacccctctaagaaaaaggtcatgcatggggctgatcgggatata
ctgtggcttcaacgagattttggcatatatgtttgcaacttattcgacactggacaggca
tcaagggtgttggagttagagcggaacagtttggagtttcttctaaatcacttttgtggt
gtagctgcgaacaaagaataccagaatgcagaatggagactcaggcctcttcctgatgag
atggttagatatgccagagaggatacacattatctgttgcatattttcgacattatgaaa
ggcatgttgctttcagcatctaccagctctgaaaatggtgaagatcttctgttagaggtc
tacaaccgaagttgtgccatatgcatgcaactttacgaaaaggagctgttgaccgacaca
tcgtatctctacatctatggtttacaagatgctgatttgaactctcagcagcttgctatt
gttgctgggctttgtgaatggagagatgctgttgcccgtatggaggatgaaagcactggc
tttatattgccaaacaaagcactaatagaaattgccaggcagaagcctgacagtgctagt
aagttgcgccgactagtgaagtcaaagcatccatatattgagcacaatcttggaactgta
gttgccattataaaaaatgccttacaaaatgctccagctttcgaaatcgctgctgaacaa
ctgaaggaacgtgcattaacggcatccaagcaacatacagaagtagttcctgacgaattt
gaagcctcgcctacttcagaggatcgtacagagatgatggagtccccccctgctcatcca
gaaatgattaacactgacgttagcaacagtgtgaacagtagtgttttacgtgacaagcaa
gtggctgcagaactcagcaatggtaataatactttgcatggagtgtccgtggaacagagt
tcttgtggaattggagatgaaaggaaaaaagagaatactggaacaggctcttgcttattt
cccacaaaggctgttccagaggtgaccgttcaagtgttaaagaagccaaatcgtgctttt
ggggcattgtttggtaactcgggctcaaagagaaaactcgatccaaattctaaggataag
gcacagatgaaggttgaacagatcaaatcgtcggtaactcttccttttcactcattcatg
ggcaatgaccagtcaaaacctcttgtagaagtgagcactaaatcctctgatttctccctg
cctgatgaacaaattcctctagggaatgaggttgcaaaagtggatgatataattccattg
gagagtggtcagggaataaatggtgatggtgccgagtctgaatcggataaagatgaacaa
cccatgtctctctctgaattatcctccaactttaagaaatgttttcagccgaaacaagaa
ctaagaagaaacaaggttgagaaatctctagagtctgaggaagtaagtttgaattttgag
cctttcaattatgaagcagctaggaaacatctaaaattcgggaaagatcaagaagaaaag
caggaagcagaggagggcgatgaacaaggacctaaaagtccgaaagagtccaaggggagg
cgtaagaaaccagttttcacccgactacctacagaagaagaggccaaggcatttcagcag
caggccagaaggcgtcaagcttttccacagagtgggaaccgaagttcaacctttcgctct
tag
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