Papaver somniferum (opium poppy): 113321769
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Entry
113321769 CDS
T05758
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113321769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113321769
03041 Spliceosome [BR:
psom03041
]
113321769
03009 Ribosome biogenesis [BR:
psom03009
]
113321769
03016 Transfer RNA biogenesis [BR:
psom03016
]
113321769
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113321769
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
113321769
Spliceosome [BR:
psom03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113321769
Complex C
U4/U6.U5 tri-SnRNP related factors
113321769
Ribosome biogenesis [BR:
psom03009
]
Eukaryotic type
Pre-60S particles
Helicases
113321769
Transfer RNA biogenesis [BR:
psom03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
113321769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
113321769
NCBI-ProteinID:
XP_026425466
LinkDB
All DBs
Position
11:42249639..42257297
Genome browser
AA seq
992 aa
AA seq
DB search
MDYLKRKLDGNTSEEVSRRQKQQKEMESLIGGDDSVACIHDVSYPEGYKPRSDNNSDKKN
TKPAREYPFTLDPFQSEAIKCLDNGESVMVSAHTSAGKTVVALYAIAMSLRDKQRVIYTS
PIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEIMREVAWV
IFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHRQPCHIVYT
DYRPTPLQHYIFPSGVEGLYLVVDEKGKFREDSFQKGLNALLPAGEGDNKKKNGKWQKGL
VASKSGEESDIYKLVKMIIQRQYDPVIIFSFSKRECESLAMMMAKMDLSDDVEKANIEEI
FWNAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATE
TFSIGLNMPAKTVVFTNVRKFDGDKFRWITSGEYIQMSGRAGRRGIDERGICILMVDEKL
EPSTAKMMLKGSADCLNSAFHLSYNMLLNQMRSEDGDPQNLLRNSFYQFQSDRAIPDLER
QAKKLEEERDSIIIAEEESVKDYYNLLEQYHKRKKDIHDIVCCPKYCLPFLQPGRLVCIQ
CMRGDNKNPSFSIENHVSWGVIINFERVRGLSEDDSRRKPEDANYKVDVLTRCVVSKDGD
GKKSVKIVPLEEQGEPVVVAIPISQIDGLGSPVVIIPKDLLPLEARENTLKRVSEVLSRV
SEEIRLLDPEGDMKVQHKDYKKNVNRIEALERLFSKHGVAKSPLIKEKLKVLHLKNELQA
KIKLIRKTLHTSTALAFKDELKARKRVLRKLGYVTRDGVVELKGKVACEITSADELTLTE
LMFNGVLKDATVEEMISLLSCFVWQEKIQDAQKPREGLDLLFTQLQETAKRVATVQLDNR
VPIDVEGFVNSFRSDIMEVVYAWAKGAKFYEIMEITQVFEGSLIRAIRRLEEVLQQLTEA
AKSIGETQLEAKFQEAVAKIKRDIVFAASLYL
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggactatttgaagagaaaactggatggaaatacttctgaagaagtcagtcgccgccaa
aaacaacagaaagaaatggaatctctaattggtggtgatgattcagtagcttgtatccat
gatgtatcgtatcccgaaggatataaacctcgttcagataataattctgataagaaaaac
acaaaacctgcaagggaatatccttttactctagatccatttcaatctgaagctattaaa
tgtttggataatggagaatctgtaatggtttcagctcatacttcagctggaaaaacagtt
gtagctttatatgctattgctatgtccttgagagataaacaacgtgttatttatacttca
ccaattaaagctcttagcaatcaaaagtatagagaatttaaagaagaattctccgatgtt
ggccttatgacaggagatgtaacaattgaacccaatgcttcttgtctggttatgacaact
gaaatttggcgtagtatgcaatataaaggatcagaaataatgagggaagtggcctgggtt
atatttgatgaagttcattatatgcgtgatagagaaagaggtgttgtttgggaagagagt
atcgtaatggcacctaaaaattcccgctttgtttttctatctgcaacagtacccaatgcc
aaggagtttgcggattgggttgcgaaggttcaccgacaaccatgccatattgtttacacg
gactatcgtcctacaccacttcaacattacatctttccttctggagtggaaggtttatac
ttagtcgtggatgagaagggtaaattccgggaagatagctttcagaaaggcttaaatgca
cttcttccagctggcgaaggagataataaaaagaagaatggaaaatggcagaaagggttg
gtggctagtaaatcaggtgaagagagtgatatctataagttggtgaagatgattattcaa
cggcagtatgatcctgttataattttcagtttcagcaaaagggagtgcgaatctctcgcc
atgatgatggcaaagatggatctgagtgatgatgtcgagaaagcgaatatagaagagatt
ttctggaatgcaatggacttactgtcagatgatgataaaaaacttcctcaggtgtcgaac
atgttacctttgctgaagcggggaataggtgtgcatcattctggcttgttacctattttg
aaagaagtaatagagatactcttccaagaaggtctcatcaagtgtttgtttgcaaccgaa
actttcagcataggactaaacatgcctgcaaaaactgtggtgtttacgaatgtgcgcaag
tttgacggggataagtttagatggataaccagtggagagtatatacagatgagtggtcgt
gctggtcgtcgtggaattgacgagcgtgggatatgtattctcatggttgatgagaagctg
gaaccatcaacagcaaaaatgatgctgaaggggagtgcagattgtttaaacagtgccttc
catctcagttacaatatgcttttgaaccaaatgcggtctgaagatggcgatccccagaat
ctacttcgaaattcattttatcaatttcaatcggaccgagcaattcctgatttggagaga
caagcgaagaaactagaagaagagagagattcaattataattgctgaagaggagagtgtg
aaggattactacaatcttttagagcagtaccataaacggaagaaggatattcatgatatc
gtctgctgtcctaaatactgtttaccttttttacagcctggcagacttgtttgtatccaa
tgtatgagaggtgataataagaacccatctttctccattgagaaccatgtttcctggggg
gtgataatcaacttcgaaagggtgagaggcctttctgaagatgattctaggaggaaacct
gaggatgcaaactacaaagtagatgttcttacaagatgtgttgttagcaaggatggagat
gggaaaaaatcagttaagattgtgccgttggaagagcagggagagccagtcgtggttgcc
atacctatctcacagattgatgggttaggcagtcccgttgtaatcataccaaaagatctt
ttgcctttggaagctcgagaaaatactttgaagagggtttctgaagttctgtccagagtt
tctgaagaaattcgtttgctggatccggaaggggacatgaaggtccagcataaagattac
aagaagaatgtcaatcggatagaggctctagagaggttattcagcaagcatggagttgca
aagtctccgcttattaaagaaaagttgaaggtcttacacttgaagaatgagttgcaagca
aaaatcaagttaatcaggaaaactttgcatacttctacagcgttagcctttaaagatgaa
ctcaaggcacggaagcgggtccttcggaagctggggtatgttacaagagatggtgtcgtg
gagttgaaggggaaggttgcttgtgagatcaccagtgctgatgagctgacgctgacagag
ctcatgtttaatggtgtgttgaaggatgctactgttgaggagatgatttctttgttgtca
tgttttgtgtggcaggaaaaaattcaggatgcccagaaacccagggaagggcttgacctg
ctctttactcagctgcaagagacagcaaaaagggttgctacagttcagcttgataataga
gttccaatagacgtagaaggtttcgtaaattccttcagatctgatattatggaggttgta
tatgcatgggcaaagggggccaaattctatgaaattatggaaatcacgcaggtttttgag
ggtagtctgatcagggctattaggagactggaagaagttctgcagcagctaacagaggca
gcaaagtctattggtgaaactcaacttgaagcaaagtttcaagaagctgttgccaaaatt
aaaagggatattgtctttgcagcatctctatatttatag
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