Papaver somniferum (opium poppy): 113321838
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Entry
113321838 CDS
T05758
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113321838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113321838
03041 Spliceosome [BR:
psom03041
]
113321838
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
113321838
Spliceosome [BR:
psom03041
]
Complex B
Other components
Prp19-related factors
113321838
Complex C
113321838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_2
TPR_19
TPR_16
ARM_TT21_C
TPR_MalT
NRDE-2
PPR
AbiH
Motif
Other DBs
NCBI-GeneID:
113321838
NCBI-ProteinID:
XP_026425552
LinkDB
All DBs
Position
11:91091988..91096532
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AA seq
913 aa
AA seq
DB search
MSIPLELYPSQDDLLYEEEILRNPFSLKLWWRYLIARNESPFKKRSVIYERALKALPGSY
KLWYAYLRERLEIVRNLPVTHSQHESLNNTFERALVTMHKMPKIWVMYLQTLTEQKLVTR
TRRTFDRALCALPVTQHDRIWGPYLYFVSQRGIPIETSLRVYRRYLKFDPTHIEDFIEFL
VNSELWQEAAERLAGVLNDDRFYSIKGKTKHQLWLELCNLLTSHATEVSGLKVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRGLFEKARDVFEEGMTTVVTVRDFSVIFDGYSRFEESVL
AAHMESLDIGDEEENNQDKEEKDERFDTKVSLAKFTYKTLHGFWCNDDNDVDLRLARLEH
LMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTFTEAVRTVDPMKAVGKPHT
LWISFAKLYVEHNDIANARVIFDKAVQVNYKTVDNLASVWCEWAEMELKHKNLEGARELM
RRATAEPSVEVKRRVAADGNEPVQMKLHKSVRLWTLYVDLEEGLGTLESTRAVYERILDL
KIATPQIIINYASLLEEHRYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKSKL
ERARELFEQAVEMAPADNAKPLYLQYAKLEEEHGLAKRAMKVYDQAAKALPDKEKLQMYE
IYIARAAEFFGVPKTREIYEQAIESGLPSEDVKTMCMKYADLEKSLGEIDRARAIYIFSS
QFADPRSDNDFWSRWHDFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPENLMQKDSRL
NLEETVDTLKRAGVPEDEMANLERQLAPAAQDNSTRRLGFVSAGVESQSGVIRTPDGGRK
VVADQDAIELPEDDDEEEGDKEVEIAQRDVPAAVFGDLAQKVAEEVGEDGDARKRESDSK
LGALERMKRHKKG
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatccctctggagttatatccgagccaagatgatctcctctatgaagaagaaatt
ctcagaaatcccttcagtctaaagctatggtggagatatctaattgctcgcaatgaatct
cccttcaaaaaaaggtcagtaatttatgaacgagctttaaaagctttacctggtagttac
aaactctggtatgcttatctaagagaacgattagagatagtacgaaatctgcctgtaacg
cattctcagcatgagagtttgaacaatacattcgaaagagctttagttactatgcataag
atgccaaagatttgggtaatgtatttgcaaaccctaactgaacagaaactagtaacccgt
actcgtagaacttttgatagagcattatgtgcattaccagtgacccaacatgatagaatt
tggggaccttatctgtattttgtgagtcagagagggattccgattgagacttcacttagg
gtttataggaggtatttgaaattcgatccgactcatattgaagattttattgagtttttg
gtgaattctgagttatggcaagaagctgctgaaagattagctggggttttgaatgatgat
aggttttatagtattaaagggaagacgaaacatcagttgtggcttgaattgtgtaatttg
cttactagtcatgcaacagaggtgtcaggtttgaaagttgatgcaattattagaggtggg
attaggaagtttactgatgaggttggtaggttgtggacatctttggcggattattatatt
cgtagagggttgtttgagaaggcgagggatgtatttgaggagggaatgaccactgtggta
accgttagagatttcagtgtgatttttgatgggtattctcgatttgaagagagtgtactt
gctgcacatatggagtcattagatattggtgatgaagaagaaaataatcaggataaggaa
gagaaagatgaacgttttgatactaaagtttcattagctaagtttacatacaaaactctt
catgggttttggtgtaatgatgataatgatgttgatttgaggttagctcgactagaacat
cttatggatagaaggcctgagcttgctaacagtgttcttctgcggcaaaatcctcataat
gttgaacaatggcatagaagggttaagctcttcgagggtaatccgacaaagcaaatactg
acgttcactgaagctgtaagaactgtggatcccatgaaagctgttggtaagcctcacact
ctatggatttctttcgccaagctgtatgtagagcacaacgatattgcaaatgcaagagtg
atctttgataaggcagtgcaagttaattacaaaacggtagataatctggccagtgtttgg
tgtgaatgggccgaaatggaactgaagcacaaaaacttggaaggagcacgggagctaatg
agacgtgcaacagcagagccttcagtggaggttaaacggagagttgctgctgatggtaat
gaaccagtgcagatgaagttgcataaatccgtgaggttgtggaccttgtatgtggatcta
gaggagggtttgggaactctggagtccacccgtgcagtgtatgagcggatactcgatttg
aaaatagctacaccacaaattataataaattatgcaagtttattggaggagcatagatac
ttcgaggatgcgtttaaagtttatgaaagaggagtcaagatatttaaatatccacacgtt
aaggatatttgggtcacatatctctccaaatttgtcaaacgatacggaaaatcaaagttg
gaaagggcaagggagttgtttgagcaagcagttgaaatggcccctgctgataatgcgaag
ccactgtatttgcaatatgcaaaactagaagaggaacacggtcttgctaagcgcgcgatg
aaagtctatgaccaagcagcaaaagctttacctgacaaggagaagctgcaaatgtatgag
atttacatagcccgcgccgcggagttttttggtgttcctaaaacaagggagatatatgag
caagccatagaatctgggttgccaagtgaagatgtcaagactatgtgcatgaaatatgca
gaccttgagaagagtttaggagaaattgatcgcgctcgtgctatatacattttctcatca
cagtttgctgatccacgatcagacaatgatttctggagtagatggcatgattttgaggtg
cagcacgggaatgaggatacattcagagaaatgcttcgaataaagaggagtgtttctgct
agttacagccagactcatttcattctcccagagaatttaatgcagaaggattcaaggttg
aaccttgaggaaactgtggacacactcaaacgtgctggagtccccgaagatgaaatggct
aaccttgagaggcagttagcacctgcagctcaagataacagtactagaagactgggtttt
gtaagtgcaggagttgaatcacaatctggtgtcatccgtacaccagatggtgggaggaag
gttgttgcagaccaggatgcgattgaattacctgaagatgatgatgaggaggagggcgat
aaagaagttgaaatcgcacaaagagatgtccctgctgcggtgtttggggatttggcacag
aaggtagcagaggaggtgggtgaagatggggatgccagaaagagggagagtgacagcaaa
cttggcgcccttgaaagaatgaagaggcacaagaaggggtag
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integrated database retrieval system
