Papaver somniferum (opium poppy): 113322137
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Entry
113322137 CDS
T05758
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113322137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113322137
03012 Translation factors [BR:
psom03012
]
113322137
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113322137
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113322137
Translation factors [BR:
psom03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
113322137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
T2SSE
AAA_19
Rad17
NACHT
Motif
Other DBs
NCBI-GeneID:
113322137
NCBI-ProteinID:
XP_026425947
LinkDB
All DBs
Position
11:complement(105016109..105022374)
Genome browser
AA seq
1033 aa
AA seq
DB search
MFLRVLSINCYHFSFYKTLPFHQGLLVRLSSSSTSTTTAMSYRPNSQGGRRGGGPGGGRS
GGGRRGGGGGGRGRGGGGEQRWWDPVWRAERLRQMQAENPVEVLDKNEMWGKMEELINSS
EQELIIKKNYGRDGQQTLSDMAYQLNLYFHGYNKGRILVVSKVPLPMYRADLDERHGSTQ
KEIQMSMETEQRVQNLLNGSNAVPTDDSSASSSSHGLQSLPSVSADRVPVADIAKEKCSA
ELKDKQDRMKTNDKLKAMRSFREKLPAYKLKSEFLKAVANNQVLVVSGETGCGKTTQLPQ
FILEEEAACLRGADCNIVCTQPRRISAISVSARISSERGEQLGETVGYQIRLEAKRSAQT
RLLFCTTGILLRQLVQDPSLTGVSHLLVDEIHERGMNEDFLIIILRDLLPRRPDLRLILM
SATINADMFSKYFGNAPTMHIPGFTFPVEELFLEDVLEKSCLNISSKDRFPGNARGRRKQ
TDSKKDPLVELFEEVEIDAHYKTYSASTRCSLAEWSAEKIDLDLVEATIEYVCRHEGGGA
ILVFLTGWDEISKLLDKIKANTLLGNSSKFLVLPLHGSMPTVNQREIFDRPPSGVRKIVF
GTNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASARQRRGRAGRVQPG
VCYRLYPKMIYDAMPQYQLPEILRTPLQELCLHIKSLQLGSIAAFLGKALQPPEPLSVQN
AVELLKTIGALDDAEELTPLGRHLCTLPLEPNIGKMLLMGSIFQCLDPALTVAAALAHRD
PFILPIDRKEDADAAKRSFAGDSCSDHIALLKAFDGWNDAKRSGRERAYCWENFLSPLTL
QMMEDMRKQFLDLLCDIGFVNKSKGAKAYNIYSDDLEMVSAILCAGLYPNVVQCKRRGKR
TAFYTKEVGKVDIHPASVNAGINSFPLPYMVYSEKVKTTSIYIRDSTNISDYALLLFGGN
LIPTKAGEGIEMLEGYLYFSAAKSVLDLIKNLRNELDKLLARKIEEPGLDVYAEGKGVVD
AAVELLRSRSIQR
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgttcctacgcgtgttgagtatcaactgttaccacttctctttttataaaacccttcca
tttcatcaaggattactagttcgtttaagctctagctccacttcaaccaccacagccatg
tcgtatcgtcccaattctcaaggtggtcgtaggggtggcggaccaggtggcggacgcagc
ggtggtggtcgcagaggcggtggcggtggtggtcgaggccgtggtggtggtggtgaacag
agatggtgggatcctgtttggagagctgaacgtcttagacaaatgcaagctgagaatcca
gttgaagtccttgataagaatgaaatgtggggtaagatggaggaattgataaacagtagt
gaacaggagctaataattaagaagaattatgggcgcgatggacagcaaactctttccgat
atggcttaccagttaaatctttactttcatggttacaataaagggaggatcttggttgtc
agtaaagttccgctgcctatgtacagggcagatcttgatgaacgtcatgggtcaacacag
aaagagattcaaatgtctatggagactgaacagagagttcaaaatctcttgaatggctca
aatgcagttcccactgatgattcttctgcgtcttcaagtagtcatggtttgcaatctttg
ccttctgttagcgcagatcgtgtaccagttgcggatattgcaaaggagaaatgtagtgct
gaactcaaggataagcaggatagaatgaagacaaatgacaaattaaaagcaatgaggtct
ttcagggaaaaactacctgcatacaaattgaaatccgaatttttgaaagctgttgcaaat
aatcaggtgttggtagtttcaggtgagactggttgtgggaaaaccacgcaacttcctcag
tttattctagaagaagaagcagcatgtctgcggggggcagattgcaacatagtatgcact
caaccaagacgtatatcagctatatctgtctcagctcgaatttcttctgaaaggggtgaa
caacttggagaaacagttggttaccagatccgcttggaagccaaacgctcagcccagaca
cggcttttgttttgcaccactgggatactgctgcgacagttggttcaggatccatcttta
actggagtcagccacttactggtggatgagatccatgaaagaggcatgaatgaagatttt
ctcataattattttgcgtgaccttcttccccgtcgtccagatctgcgtcttattctaatg
agtgctaccatcaatgcggatatgttctccaagtactttggaaatgcaccgaccatgcat
atacctggatttacttttccggttgaagagttgtttctagaagatgtgctagagaaatca
tgcctcaatatcagttcaaaggacaggtttccaggaaatgcacgtggaaggaggaaacaa
acagattcaaagaaagatcctctggttgagttgtttgaggaagtggaaattgatgctcac
tacaaaacttacagcgcaagtactagatgttcccttgcagaatggtccgctgaaaagatt
gacctggatcttgtagaagcaacgattgaatatgtttgtcgccatgaaggtggtggagca
attcttgtattcttaactggctgggatgagatatctaaattgttagataaaattaaagca
aacacccttcttggaaattcaagcaagtttcttgttcttcctctgcatggttcgatgccc
accgtcaatcagcgtgagatatttgatagacctcccagtggtgtgaggaaaattgtattt
ggaacaaatattgctgagagtagtatcaccatagatgatgtagtttacgttgtggactgt
ggaaaggcgaaggaaaccagttatgatgctctcaacaagctagcttgcctgttaccatct
tggatttcaaaagcctcagcgcgtcagagacgaggacgtgccgggcgtgttcaacctgga
gtttgttataggttgtaccctaagatgatctatgatgctatgccccagtatcaattgcct
gagattttgcgaacacctttgcaagaattatgcctccacatcaaaagcttacagcttgga
tccattgcagcctttttaggaaaagcacttcaaccaccagagcctctctctgttcaaaat
gctgttgagctactcaaaactattggtgctttagatgatgctgaggaactcacgccactt
ggtcgtcatctttgtactctaccattggaaccaaatatcggaaagatgcttcttatgggg
tctatctttcagtgcctggatcctgcattaacggttgctgctgctcttgctcatcgtgat
ccatttattcttcctatagataggaaagaagatgctgatgcagcaaaaagatcatttgct
ggagactcttgcagtgatcacattgcacttctgaaagcgtttgatggttggaacgatgcc
aaacgttctggaagagagagggcatactgctgggagaatttcttatcacctctaaccttg
cagatgatggaggacatgagaaaacagtttctggacctactgtgtgacattggttttgtg
aacaaatcaaagggtgctaaggcttacaacatctacagtgatgatttagagatggtatct
gcaattttgtgtgctgggctgtatccaaatgttgtgcaatgtaaacgaaggggcaaaagg
acagcattttacactaaagaagtaggcaaagttgatattcatccagcatcagttaatgct
gggataaacagtttccctctgccgtacatggtgtacagtgaaaaagtgaagacgaccagc
atttacatcagagattctactaatatatcagattatgccctacttctttttggaggcaat
ttaattccaaccaaggctggggagggaatcgaaatgcttgagggatacctctatttctct
gctgcaaaaagtgtattagacctcataaagaatttgagaaatgaacttgataagcttctt
gcccgcaagattgaggagccagggctggatgtttatgcagagggtaaaggagttgttgat
gcagctgtcgagctgttgcgcagccgaagcatacaacggtag
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