Papaver somniferum (opium poppy): 113322442
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Entry
113322442 CDS
T05758
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113322442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psom03041
]
113322442
Spliceosome [BR:
psom03041
]
Complex B
Other components
Prp19-related factors
113322442
Complex C
113322442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH
zf-CCCH_3
zf-CCCH_4
zf-CCCH_10
RRM_occluded
RRM_3
Motif
Other DBs
NCBI-GeneID:
113322442
NCBI-ProteinID:
XP_026426306
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All DBs
Position
11:complement(110795276..110798363)
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AA seq
491 aa
AA seq
DB search
MAHRFLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARFKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALAIDSNDSIPKSDVNREYFAE
EHDRRARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFFVRGECTRGAECPYR
HEMPITGELSQQNIKDRYYGVNDPVAAKLLNKAGEMPSLAPPDDQSIKTLYIGGLDARVT
EQDLRDNFYSHGEIESVRMVLQRACAFVMYTTREGAEKAAEELSNKLVIKGLRLKLLWGR
SQAQRAELENQDDEAARQQALTHGGLLPRAVISQQQNQVQPPGAQDQPSAPMSYFNIPPP
PQPERAYYPSMDPQRMGAVVPSQEGSSSGSSGIIDQGIQYPYQRPPMQGHYPPYYPPYGY
MAPPPPYQQYSHQPLPQPPPPMGAQPQPPYHQQPSGAPQPQPPFQQQQSGAAQPQPPHEH
KLSDPPASSSN
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggctcatagatttcttagagatctagaagcggatggctgggaacgctccgattttccc
attatttgtgaatcttgtcttggggataatccttacgttcgaatgactaaagcagattat
gataaagaatgcaagatttgtacacggccgttcactgtttttaggtggagacctggtcgt
gatgccaggtttaagaaaaccgaggtatgccagacatgcagtaagcttaaaaatgtgtgt
caggtgtgtcttttggatttggagtatgggttgccggtgcaagttcgcgatactgctcta
gccattgattcaaacgactctattccaaagagtgatgtcaatagagagtattttgctgag
gagcacgatcgtagggctagagctggaattgattatgaatcttcttatggaaaggcacgc
cccaatgatactattctgaagctacaaaggacaactccatactacaagagaaatcgagca
catgtttgcagtttctttgttcgaggcgaatgtaccagaggcgctgaatgtccttatcga
catgaaatgcccattactggagaattgtcccagcagaatatcaaagatcgttattacggg
gttaatgacccggttgcagcaaaattgctgaataaggccggtgagatgccgtcgcttgct
cccccggatgatcaaagcatcaaaactttatacattggtgggcttgatgccagagtcact
gagcaggacttacgagataacttttattctcatggagagatcgagtccgtgaggatggta
ctccagcgagcatgtgcatttgtaatgtacacgactagagagggtgcagagaaggctgca
gaagagctctcaaataaactggtcataaagggtttgaggcttaagcttttgtgggggaga
tcacaggcgcagagggcagagttagagaaccaagacgacgaagctgcaagacagcaagca
ctaactcatggagggttactacctagggcagtcatttcacagcagcaaaatcaagtccaa
cccccaggggctcaagaccaaccttcagcacctatgtcttatttcaatatcccacctcca
ccacaacccgagagagcttattacccatctatggatcctcagaggatgggtgctgtagtt
ccatcccaggaaggctcaagcagcggttcaagtggaataattgatcaaggcattcagtac
ccttaccagcgaccaccaatgcaaggccactacccaccttattatccaccatatgggtat
atggctccacctccaccttatcagcagtactctcatcagccactccctcaaccaccacca
cctatgggagcacagcctcagcctccatatcaccagcaaccttcaggggcaccacagcct
caacccccatttcagcagcaacagtctggggcagcacagcctcaacctccacatgagcac
aaactctcagatccaccggcatcgtccagtaactag
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integrated database retrieval system
