Papaver somniferum (opium poppy): 113322552
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Entry
113322552 CDS
T05758
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113322552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113322552
03019 Messenger RNA biogenesis [BR:
psom03019
]
113322552
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113322552
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
113322552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pfc11_Clp1_ID
Motif
Other DBs
NCBI-GeneID:
113322552
NCBI-ProteinID:
XP_026426444
LinkDB
All DBs
Position
11:complement(7703295..7709620)
Genome browser
AA seq
962 aa
AA seq
DB search
MEMESSRRPGLKKPRLVEDLERELSSNGSLIDHRVVRRGGGGGAQPPSTILSRVRENNDT
STRVNNQQQLQAQQQHQEIVSEYKSALAELTFNSKPIITNLTIIAGENLHAAKGIAAAIC
SNILEVPTEQKLPSLYLLDSIVKNIGRDYIRYFALRLPEVFGKVYRQVDASMHTSMRHLF
GTWKGVFPPACLQQIEKEFGFGSATNVSSSGGPTPRPDSQSQRPANSIHVNPKYLEAARQ
RLQQSNRAKVDESTAAVDTTMPVKTAINGRGRPWADPPIKQVNRDPRLALRELEKKTSVG
YEDNEYGSDLSRHSEVEIRKRSERALEQGLGKPWYAAGGNATDTISQRNTVNSNNGSVNL
RTPRSSQVIAQLQPSQKAMNKSILGGMPGNWKNFEEEEYLWDDMKSRQREHDSSSQDTWP
PENDDKPEFEDSLTQPHSDIRSRINRKTSTDSSSMAYQKQAAFGHHTPSTWALQESHTAN
GLNHKVTPEGFSGLSDGPSTYLSGLTGMASSTARAGRQSLTESPVGAANFGGSLMNPASG
SGGVFGQKRHQLLRSASPSEQSEPEKKILKLAGQFNQASQDSFLSKSHHHPQNLRGSSPP
LPHQELSNSGNISDIAGQLSRSNLLAAMMKTVSGGIPSLELQDSHSNIQPPLPSGPPPTL
SAPSSASMASKHPKRTLVAPPLPPGPPPPVSVQTTKTTNAAQNPLSSLLNTLVGKGLISA
PAKSSKLSSTQGPGQLPHQSSPISTRSTVPVSGSASLLSHGNIWQPSESKAEKIPTMPQP
KMSEIKDLIGFEFKPELLRESHPSVISDLFEDLPHECSICGLRLKLEGGLERHLEWHALK
KREASSSNSVSRKWFLSSVDWISGTTTLSSELEKSKDEPEVPADESQCACLLCGELFEDF
YSHKKEIWMYKGAVYMTVPALETEGKSWTIDESSSGGPIVHASCISPSSVYDLGLAKKVE
QM
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atggagatggagagtagtcgtagaccaggtttgaaaaaacctagattagttgaagatctt
gaaagagagttatcttctaatggttctttaatcgatcatcgtgttgttcgaagaggcggc
ggtggaggagctcagccaccatcaacgattctatctagggttagagaaaacaacgatact
tcaactagggttaataatcagcagcagcttcaagcacaacaacaacatcaagaaatagtt
agtgaatataaatctgctttagctgaattaacattcaattcgaaaccgataataacgaat
ttgacgattatagctggggagaaccttcatgctgctaaagggattgctgcggctatttgt
tctaatattctcgaggttcctactgagcagaagttaccatcgctatacctattggatagt
attgtgaagaatattggcagagattacatcagatacttcgccttgaggctgcccgaggtc
tttggcaaggtgtacagacaggtcgatgcttcaatgcataccagtatgcgacatcttttt
gggacatggaaaggtgtattccctcctgcttgtcttcagcagattgaaaaggagtttggt
tttggatcagcaaccaatgtttcatcttctggaggcccaacaccaaggcccgattctcag
tcccaacgaccagcaaatagcatccatgtgaatcccaaatatttagaggcggcgaggcag
cggcttcagcagtcaaacagggcaaaagttgatgagagtactgctgcagtggatacaaca
atgcctgttaaaacggccatcaatggccgtggaaggccatgggcagatccaccaataaag
caggttaatagggatcctcgacttgcattacgtgagctcgaaaagaagacaagtgtagga
tatgaagataatgaatatggttctgatctttcaaggcattcagaggtggaaatcagaaaa
cgtagtgagcgggctttagaacaaggacttggaaagccttggtacgcagcaggtggcaat
gccactgacacaattagccaaaggaatactgtcaacagtaataatggatccgtaaacctt
cgaacacccagatcttcacaagtcattgctcagctccaaccttcgcagaaagctatgaat
aaaagcatcttaggagggatgccggggaattggaagaattttgaagaagaggagtacctg
tgggatgacatgaaatccagacagagagagcatgatagctctagtcaagatacttggcct
cccgagaatgacgataagccggagtttgaagatagccttacacaacctcacagtgatatt
agatcgaggattaacagaaaaacttcaactgattcatcgtccatggcataccaaaagcaa
gctgcatttggccatcatacaccgtcaacatgggcattgcaagagtcgcacacagctaat
ggtttgaaccataaggtgacccctgaaggattttcgggactatctgatggaccttccacc
tacctcagtgggttaacaggcatggcttcatctacagccagagcaggacgtcaaagtcta
accgaatctccagtaggcgcggctaattttggcgggtctctgatgaacccagcatcagga
tctggtggagtttttggacaaaagcggcatcagcttctgcggtccgcttctccatctgaa
cagtcagaacctgaaaaaaaaatattgaagttagcaggacagtttaaccaggcatctcaa
gattctttcttgtctaaaagtcaccatcaccctcaaaatttaaggggctcatctcctcca
ctgccgcatcaagagctgagcaattcaggcaacatttcagatattgcagggcaattgagt
agaagtaatctattggctgcaatgatgaagactgtatccggcggcatccccagtttagaa
cttcaggactctcattcaaatattcagccacctcttccaagtggacctcctccaaccctt
tcagcgccatcctctgcttccatggccagcaaacatcctaagaggacattggtagcacct
cccttgccacctggccctcctcctcccgtgtcagtacaaacgactaagacaactaatgct
gcacagaatccactttcaagtcttttgaacacattagttgggaaggggttgatctctgca
cctgcaaagtcttcgaagctatcttctacccaggggcccggtcagctcccacaccagagc
tctcccatttctacaaggagtacggtgccagtttctggttctgcttctttattatcacat
ggtaatatatggcagccctctgaatcaaaggcagagaagattcctaccatgcctcaacca
aagatgtcagagataaaggatctcataggctttgagtttaagccggaacttctccgagaa
tcacatccatcagtgattagtgacctttttgaagaccttcctcatgagtgcagcatatgt
ggtctgcggcttaaacttgaaggaggacttgaaaggcacttggagtggcatgcactgaaa
aagcgtgaagcaagcagttccaatagcgtttcaagaaagtggtttttgagttcagtagat
tggatctcagggacaacaaccctgtcgtctgaactggagaagtcaaaggacgaacctgag
gtccctgcagatgagagtcagtgtgcgtgcttgttgtgtggagagctttttgaagatttt
tacagtcataaaaaggagatttggatgtataaaggagctgtttatatgactgtcccagct
cttgaaacagaaggcaaatcatggacaatagatgaaagttctagtgggggtccaatagtg
catgcaagctgtatatcgccaagttcagtttatgacctgggtctagccaagaaagttgag
cagatgtag
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