Papaver somniferum (opium poppy): 113322662
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Entry
113322662 CDS
T05758
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113322662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113322662
03012 Translation factors [BR:
psom03012
]
113322662
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113322662
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113322662
Translation factors [BR:
psom03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
113322662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
T2SSE
ATPase
AAA_16
AAA_19
ABC_tran
Dicer_dimer
Myosin_head
AAA_23
Motif
Other DBs
NCBI-GeneID:
113322662
NCBI-ProteinID:
XP_026426579
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All DBs
Position
11:complement(66990324..66998098)
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AA seq
1156 aa
AA seq
DB search
MYSGLGFILRLRNSVSIISSNSSRLSSRKNVLIYLPRLPSSIVRDVRIENSISFINSVRS
FCGYAVEQFSDDEYECDFENHKASSTIANIDDWKWKLSMLLRSEEDKEIISRDKRDRRDY
EQISNLAKRMGLYCELYEKVVVASKVPLPNYRPDLDERRPQREVVIPLSLQRRVEGLLQE
HLDRVQLNFGKIGDNSIDSVVSPTENVNPDDPDSFLDGSVMEKVLQRRSSKMRDFQRGWQ
ESPEGKQMLEFRKSLPAHKEKNRLLTAIARNQVIVISGETGCGKTTQLPQYILESEIESG
RGAFCSVVCTQPRRISAMSVAERVSTERGEPLGESVGYKVRLEGVKGKNTHLLFCTSGIL
LRRLLSDRNLDGITHVFVDEIHERGMNEDFLLIVLKDLLPRRPDLRLILMSATLNAELFS
NYFGGAPTIHIPGFTHPVRAHFLEDVLELTGYKLTSFNQIDDYGQDKLWKTQKQLLPRKR
KNQITTLVEEALSRSSFESYSSRARDSLSCWTPDCIGFNLIEAVLCHICRKERPGAVLVF
MTGWEDISCLRDQIKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKAPPNVRKIVLATNM
AEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQSGECYH
LYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQLGTIGEFLSAALQPPAPLAVQNAVDF
LKMIGALDEKENLSNLGQFLSMLPVDPKLGKMLVMGAIFCCFDPVLTVVAGLSVRDPFLL
PQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIH
SLRKQFNFILKDAGLLETESSKNNSLSHNQSLVRAVICSGLFPGIASVVHRESSMSFKTM
EDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGSLTHGVS
AGHLKMLEGYIDFFMDPSLAECFWALRKELDKLLQRKLKDPTLDIHKEGKYLMLSVQELV
SADQCEGRFVFGRESKKVRETINEDRNKVSPHRKDGPNPKSLLQTLLMRAGHSPPKYKVK
HLKTNEFRALVEFKAMQFVGKPKKNKQLAERDAAIEALAWLTHTSDNNRNGGDDSPPDIT
DNMSKLLGKCKKSKKS
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgtattcaggattagggtttatcctgagactcaggaactcagtttccatcatatcaagt
aatagtagtagactatcaagtaggaaaaatgttttaatttacttacctagattaccatca
tcaattgttagagatgtcagaatcgagaatagcatttcgtttataaactccgttcggagt
ttttgtggatatgcagttgaacagttctcagatgatgagtatgaatgtgattttgaaaat
cataaggcgtcatccacaatagcaaacatagatgattggaaatggaaacttagcatgctt
ctacgcagtgaagaagacaaagaaataatttctagagataaacgagatagacgtgattat
gagcagatttctaaccttgccaaaaggatgggactttactgtgaactttatgaaaaagtg
gtggttgcaagtaaggtccctttgcccaactacaggccggaccttgatgaaaggagaccc
caaagagaggtggttatcccactgagtttacaaaggagggttgaaggattacttcaggaa
caccttgacagagtgcaattaaattttggaaagattggggataattcaattgattctgtg
gttagtccaactgaaaatgtgaacccagatgatccagactcatttcttgatgggtccgta
atggaaaaggttcttcaaaggaggagttcaaaaatgcgtgattttcagagaggttggcag
gagtcgcctgagggtaagcagatgttggagtttagaaaatctcttcctgcacataaggaa
aagaacagactgctcacagcaattgcgcggaatcaggtaatagtgatttctggagagact
ggatgtggcaaaaccactcaacttcctcaatacatattagagtccgagattgaatctggt
cgaggagcattctgtagcgtcgtatgcactcaacctcgaagaatatctgctatgtctgtt
gcagaaagagtttctacagaaagaggcgaacctcttggtgaatcagttggttacaaagtt
cggttagagggagtgaaaggaaaaaatacccatctacttttttgtaccagcggtattctg
ctcagaaggttactgtctgatcgcaatctcgatggtataacacatgttttcgttgatgag
attcatgagcgtggcatgaatgaagatttcctcttaattgtgttgaaagaccttcttcca
cgtcgtccggacttgagattgattttaatgagtgccaccctcaatgcggagttgttttcc
aattattttggaggtgcgccaactattcacattccaggatttacgcatcctgtaagagcg
cattttctggaagatgtcttggaacttactgggtataaattaacttcattcaaccaaatt
gatgattatggccaagataagttgtggaagactcaaaagcaactattgccaaggaaaaga
aagaaccagattactactttggttgaggaagctcttagtaggtcgagctttgagagctac
agttcaagggcccgagattctctgtcatgttggacacctgattgtataggctttaacctt
attgaggcggtattatgtcacatttgccggaaagaacgtccaggagcggtattagtgttc
atgactggctgggaggacattagttgcttgcgggatcaaattaaggcacatcccttgtta
ggagatcccaacagggttttgctgcttacatgccatggttcgatggccacatcggaacag
aaacttatatttgagaaagcacctccaaatgtccgcaaaatagttcttgctacaaacatg
gcagaggccagcattaccatcaatgacatagttttcgttgttgattgtggaaaagctaag
gagacaacatatgatgctttgaacaacacaccttgtttgttaccatcatggatatcacaa
gcttctgctcgtcaaagaagaggtagagctgggcgtgtgcagtcaggagagtgctatcac
ctgtatccgagatgcgtatatgaggccttcgctgaataccagcttcctgaacttttaaga
actccattgaactctttatgcttgcaaataaaaagtttgcagcttggaactattggagag
tttttgtcagccgctttacaaccaccagcaccactggctgttcaaaatgcagttgatttc
ctgaagatgattggagccttagatgagaaagagaacttgtcaaatcttggacagtttctt
tcaatgcttccagttgatcccaagcttggcaaaatgcttgttatgggtgctatcttttgt
tgtttcgatcccgttctcaccgtagtggcggggttaagtgttagggacccttttttgctc
ccacaagacaaaaaggatctagcagggaccgcaaagtcaaggttctctgcgaaggactat
agtgatcatatggctcttgtccgtgcttatgaaggatggaaagatgcagaaagagaagga
tcagcttatgagtattgctggaggaattttctctctgcccagactcttcaggctatccat
tccctacggaaacagtttaactttatcttaaaagatgctggtttattagagacagaatcc
agcaagaataatagtttaagccataaccaatctcttgtccgcgctgtcatctgttctggc
ctctttcctggtatagcatctgttgtgcatagagagagctccatgtcttttaagacaatg
gaggatggtcaggttctattatatgctaattctgtgaacgcacgctatcagacaatccct
tacccatggttggtctttggtgagaaagttaaggtcaacacagtcttcatacgggattca
actggtgtatctgattcaatactgattctctttggtggttctcttacccatggtgtctcg
gctgggcacttgaaaatgttagaaggctatattgatttctttatggatcctagtctggca
gaatgcttctgggccctaaggaaagaacttgacaagcttcttcaaaggaagctcaaagat
ccaactctagacatccacaaggaaggcaaatatcttatgctttcggtgcaggagctggtc
tcagctgatcaatgtgaaggcaggtttgtgtttggccgcgaaagcaagaaggtaagagaa
actattaatgaggacaggaacaaagttagtccacacaggaaagatgggccgaatccaaag
agcttgcttcagactttattgatgagggcaggtcatagtcctccaaagtacaaggtaaag
catttaaagaccaatgaatttagggcattggtggaattcaaagcaatgcagtttgttggg
aagccgaaaaagaacaagcaacttgcagagagagatgctgctatagaggcattggcttgg
ttaacacacacttctgacaataaccgaaacggaggtgacgattctccacctgacatcacc
gataacatgtcgaaacttctcgggaaatgtaaaaagtccaagaaaagttag
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