Papaver somniferum (opium poppy): 113323232
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Entry
113323232 CDS
T05758
Name
(RefSeq) cleavage stimulation factor subunit 77-like isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113323232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113323232
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
113323232
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_19
HAT_Syf1_CNRKL1_C
PRP6_TPR
TPR_15
TPR_2
TPR_Slam
TPR_YpiA
TPR_16
TPR_CcmH_CycH
CFAP70_mid_TPR
Motif
Other DBs
NCBI-GeneID:
113323232
NCBI-ProteinID:
XP_026427298
LinkDB
All DBs
Position
11:60903602..60912717
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AA seq
788 aa
AA seq
DB search
MADERGIKVENQSGSETKEKKARDVLLVDKYNVEASEILASEGLGLPITEAVQLYEQLLS
TFPTAAKYWKQYVEAHMIVNNDDAIKQIFSRCLFDCRQIALWRCYIRFIRKVNDKKGAEG
QEETKKAFEFMLNYVGSDIASGPVWMEYITFLKSLPATNPQEESHRMTTIRKVYQKAIIT
PTHHVEQLWKDYENFENTVSRALAKGLVSEYQPKYNSARAVYRERKKYVDDVDWNMLAVP
PSGSYKEEQQCMAWKRFLAFEKGNPQRIDSGSSNSRITLTYEQCLMYLYHYPDIWFDYAT
WHAKNGSIDLAIKVYQKALKALPDSEVLRYAYAELEESSGAIQPAKKVYESLLGDGVNAS
ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNCTYHVFVAYAMMAFCLDKDPKVAHNVFE
AGLKRFMHEPGYVLEYADFLCRLNDDRNIRALFERALNSLPPEESVEVWKRFTQFEQTYG
DLASMLKVEQRRKEALSRTGEDGSSAFESSLHDVVSRYSFMDLWPCSSKDLDYLARQEWL
VKNINKKAEKSILLNGVGSLGAEKGSTGHPNNAKTSTTSAKVIYPDTSRMIIYDPRQKQG
AALLPNTTVPGLPAASNSVIPAPAAPLAGGTGTTKALNDILKVLPPALVAFITHFPSVDG
PSPDVDIVLSILLQSNVAPVQTAKLGNPHQQMSSAPAPSTSDLSGANKSRPNPGGVPFKS
TRESHSGGKRKDMDRQHEDETLTQSRPLPRDLFKIRQMQKARGVTSSQTGSASGGGSAFS
GELSGSTE
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgaaagaggaattaaagttgaaaatcaaagtggatctgaaactaaggaaaaa
aaagccagagatgttttattggttgataagtacaatgtagaagcctcagaaattctagca
agcgaaggtctgggtttgcctataactgaagctgtgcagttatatgaacaacttctctca
acatttcctacagctgctaaatattggaagcagtatgtggaggcacacatgattgtaaat
aatgacgatgcaataaaacagatattcagtcgttgtttatttgactgtcgacaaattgct
ctctggcgatgctatattcgttttataaggaaagtcaatgacaagaagggagcagaggga
caggaagagactaagaaagcctttgagtttatgcttaattatgttgggtctgacattgca
tctgggcccgtatggatggaatacatcacatttttgaagtcattgccggctacaaatcca
caggaagagtctcatcgtatgactacaataaggaaagtgtaccaaaaggctatcataaca
cctactcatcatgtggagcagctgtggaaggattatgaaaattttgagaataccgttagc
cgtgcactggcaaaagggttggtgtctgaataccaaccaaagtacaacagtgccagggcc
gtctatagagaacgaaagaaatatgttgatgacgttgattggaatatgcttgctgtaccc
ccctctggatcctacaaggaagagcagcaatgcatggcgtggaaaaggtttttggccttc
gaaaaagggaacccacaaaggatagatagtggatcttctaatagtcgaattaccctcacc
tatgagcagtgtctaatgtatctataccattatccggacatatggtttgactatgctaca
tggcatgcaaaaaatggttctatagatcttgctatcaaagtatatcagaaggctttgaaa
gctttacctgattctgaagttctgagatatgcctatgctgaactggaggaatccagcgga
gcaattcagcctgctaagaaagtgtatgagagcctattaggagatggggtcaatgcaagt
gcattggcacacatacaatttatccgttttctgagaagaactgaaggagttgaagcagct
cgcaaatatttcttagatgctcgtaaatctccaaactgcacgtatcatgtctttgttgct
tatgcaatgatggcgttttgtctggacaaggatccaaaggtggcgcacaatgtctttgaa
gctggtttgaaaagatttatgcatgagcctggatacgttcttgaatatgcagatttcttg
tgccgtttaaatgatgataggaatattcgtgctttatttgagagggcgttgaattcgctc
ccaccagaggaatctgtagaggtctggaagcggtttacccagtttgagcaaacatacggc
gatctggctagtatgttgaaggtagagcaaaggaggaaagaagctctttctagaacaggt
gaagatggatcctcagcattcgagagttctttgcatgatgttgtgtcaaggtacagtttt
atggatctttggccgtgctcatctaaagacctggattatttggcacgtcaagagtggctt
gtgaaaaatattaataagaaggccgaaaagtcaattctattaaatggagttggctctcta
ggtgcagaaaagggttcaactggacacccaaataatgcaaaaacatctaccacatctgct
aaagttatttatccagatacttctcggatgattatttatgaccccaggcaaaaacaaggt
gctgcattgcttcctaacactacggtacctggactgccagctgcttcgaactcggtaata
cctgctcctgccgcccctttagctggtgggactggaacaacaaaagcacttaatgacatt
ttgaaagtgctgcctccggctttggtagcatttataacacactttccctccgttgatggg
ccttcgccggacgtggacatagttttatcgatattattgcagagtaatgttgctcctgta
cagacagcgaaattaggaaatccccatcagcaaatgtcatcagctcctgctcctagcacg
agtgatctttctggtgcaaacaagtcgcgccccaacccaggtggtgtgcctttcaaatca
actagagaaagtcactcaggaggaaagagaaaagacatggataggcaacacgaagatgaa
accttaacccaaagtcgaccacttccaagggatcttttcaagattagacaaatgcagaaa
gctcgaggagtgaccagttcacaaactggatcggcatccggcggtggaagtgcattctca
ggagagttgtccggcagtactgagtga
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