Papaver somniferum (opium poppy): 113328876
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Entry
113328876 CDS
T05758
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113328876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113328876
03041 Spliceosome [BR:
psom03041
]
113328876
03009 Ribosome biogenesis [BR:
psom03009
]
113328876
03016 Transfer RNA biogenesis [BR:
psom03016
]
113328876
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113328876
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
113328876
Spliceosome [BR:
psom03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113328876
Complex C
U4/U6.U5 tri-SnRNP related factors
113328876
Ribosome biogenesis [BR:
psom03009
]
Eukaryotic type
Pre-60S particles
Helicases
113328876
Transfer RNA biogenesis [BR:
psom03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
113328876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
113328876
NCBI-ProteinID:
XP_026431657
LinkDB
All DBs
Position
1:complement(51159754..51166165)
Genome browser
AA seq
982 aa
AA seq
DB search
MNGSLKRKPEGGEEVVSDEQKKQKSRIGEEDNSEVAACIHEVSYPEGYTPSPLPRPSYDN
KPAKKYPFSLDPFQSEAIQCLEHGESVMVSAHTSAGKTVVALYAIAMSLRDKQRVIYTSP
IKALSNQKYREFKQEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEITREVAWVI
FDEVHYMRDRERGVVWEESVVMAPKNSRFGFLSATVPNAKEFADWVAKVHRQPCHVVYTD
YRPTPLQHYVFPSGGEGLYLVVDDKGKFREDSFQKALNAISPDGEGDNRKKRNGIWQKEL
VACKSGAESDIFKLVKMIKQRQYDPAIIFSFSKRECESLAMMMSKMDLSTDVEKANIEEI
FWNAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATE
TFSIGLNMPAKTVVFTNVRKFDGDKFRWISGGEYIQMSGRAGRRGIDERGICILMIDEKL
EPSTAKMMLKGSADCLNSAFHLSYNMLLNQMRREDANPVDLLKNSFYQFQSDRAIPDLKN
QAKKLKGEKDSIIIEEEESLLNYCNLLEQYQKLKKDINDIVFCPKYCLPFLKPDRPVCIQ
CTRGDNKIPSFSNEDQDTWGVIINFEDDSRRKPEDANYEVHVLTNGVVTKDGDGKKSIKI
VPLKQRGEPVVVSVPLSQINALSSHCLPIPKDLLPLAAREDALKMVCEYVSGGPLLLDPM
ENMKVRHKYYNKFVSRMENLESQFGKHEVAMSLPSEEKLKVFQLKKELEAKITLIRNNVS
FSKALAFKDELKARMRVLRSLKYVTRAGVVELKGKVAFEITSADELTLTELMFKGVFNRA
TVEEMISLLSCFVWKEKLQDAQKPREGLGLLFTELQETARTVANAQLNCKVPIDIEGFVN
SFRPDIMEVVYAWAKGSKFYEIMEIAQVFEGSLIRAIRRLEEVLQQLTEAAKSVGDTQLE
AKFQEAVTKIKRDIVFAASLYL
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggtctttgaagagaaaaccagaaggtggagaagaagtagtcagtgacgaacaa
aagaaacagaaatctcgaattggcgaagaagataattcagaagtagcagcttgtattcac
gaggtatcgtatccagaaggatatacgccttctcctcttcctcgtccttcatatgataat
aaaccagcaaagaaatacccgtttagtcttgatccatttcaatcagaagcaatacaatgt
ttagaacatggagaatcagtgatggtatcagctcatacttcagctggtaaaactgttgta
gctctgtatgcaattgctatgtctttgagagataaacagcgtgttatctatacttctcca
attaaagcacttagcaatcaaaagtatagagaattcaaacaagaattctctgatgttggc
ttaatgactggagatgtcactattgatcctaatgcttcttgtttggttatgacaactgaa
atttggcgtagtatgcaatataagggatctgaaattacgagggaagtggcatgggtgata
tttgacgaagtacattatatgagagatagagaaaggggtgttgtttgggaagagagtgtt
gtaatggcacccaagaactcgcgctttgggtttctctctgcaactgtgcctaatgccaag
gagtttgcggattgggttgcaaaggttcatcgacaaccatgccatgttgtttacacggat
tatcgtcctacaccacttcagcattatgtgtttccttctggaggggagggtttatacttg
gttgtggatgacaagggtaaatttcgggaagatagctttcagaaagccttgaatgcaatt
agtcctgatggtgaaggagataatagaaagaagaggaatgggatatggcagaaagagtta
gtggcatgtaaatcaggagcagagagtgatatcttcaagttggtgaagatgataaaacaa
cgccagtatgatcctgctataattttcagttttagcaaaagggagtgtgagtccctcgct
atgatgatgtcaaagatggacctaagtaccgatgttgagaaagcgaatatagaagagatt
ttttggaatgccatggacttactctcggacgacgataaaaagcttcctcaggtctcaaac
atgttacctttgttgaagcggggaataggtgtgcatcattctggcttgctacctatattg
aaagaagtaatagagatactctttcaagaaggtctgatcaagtgtttgtttgctacagag
acattcagcatagggctaaacatgcctgcaaaaactgtggtattcacaaatgtgcggaag
tttgatggggataagttcagatggatatccggtggagagtatatacagatgagtggtcgt
gctggccgtcgaggaattgatgagcgcgggatatgtattctcatgattgatgagaaactg
gaaccatctacagcaaaaatgatgctgaagggaagtgcagattgtttgaacagtgccttc
catctcagttacaatatgctcttgaatcaaatgcggcgtgaagatgccaatcctgtggat
ctgcttaaaaattcattttatcaatttcagtctgaccgcgccattcctgatcttaagaac
caagcgaaaaaactaaaaggagagaaagattcaattatcatcgaagaagaagagagtttg
ttgaattactgcaatcttttagagcagtaccaaaagctgaagaaggatattaatgatatc
gttttctgtccaaaatactgtttaccctttttaaagcctgacaggcctgtttgtatccaa
tgtacaagaggtgataataagatcccatctttctccaatgaggaccaagatacctgggga
gtgataatcaactttgaagatgattctaggaggaagcccgaggatgcaaactacgaagta
catgttcttacgaatggtgttgttaccaaggatggagatgggaaaaaatcaataaagatc
gtcccattgaaacagcggggagagccagttgtggtttctgtgcctctatcccagattaat
gcacttagcagtcattgtttgcccataccaaaagatctgttgccgttggcagctcgagaa
gatgctttgaaaatggtttgtgaatatgtttctggaggacctctcctcctggatcccatg
gagaacatgaaggtccggcataaatattacaacaagtttgtttcccggatggagaatcta
gagagccaattcggcaagcatgaagttgcaatgtctctgcctagtgaagaaaagctaaag
gtctttcagttgaagaaagaattggaagcaaagatcacgctgatcaggaataatgtgagt
ttctctaaagcattggcttttaaagatgaactcaaggcacgaatgcgagttcttcggagt
ctaaagtatgttacacgagctggtgttgtggagttgaaggggaaggttgcttttgagatt
accagtgctgatgagctgacactgacagagctcatgtttaagggtgtgttcaacagagct
actgtcgaggagatgatttctttgctgtcgtgttttgtgtggaaggagaaacttcaggat
gcccagaaacccagggaagggcttggcctgttgttcactgagctgcaagagacagcaaga
actgttgccaacgctcagcttaattgcaaggtcccaattgacatagaaggttttgtaaat
tccttcagacccgatattatggaggtcgtatatgcatgggcaaaagggtccaaattctat
gaaataatggaaatcgcacaggtttttgagggtagtttgatcagggcaatcaggagactg
gaggaagttcttcagcagctaacagaggcagcaaaatctgtaggtgatacccaacttgaa
gccaagtttcaagaagctgttactaagattaaaagggatattgtctttgcagcgtctttg
tatttgtaa
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