Papaver somniferum (opium poppy): 113328945
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Entry
113328945 CDS
T05758
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2-like isoform X1
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113328945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113328945
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
113328945
U7-dependent histone pre-mRNA processing factors
113328945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
ODP
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
113328945
NCBI-ProteinID:
XP_026431729
LinkDB
All DBs
Position
Unknown
AA seq
851 aa
AA seq
DB search
MGILVTPLSGAYNEDPLSYLVSIDGFNILIDCGCNDVFDTSLLKPLSSVASKIDAVLLSH
PDIPHLGAFPYAKHHLGLTAQVYSTEPVRRLGLLTMYDHYYSQKQVSGFDLFSLDDIDCA
FRSIETLKYSENHHLTGKGEGIVIAPHVVGYLLGSTVWKITKDGEDIIYAVDFNHPKHLN
GTVLESFVRPAVLITDAYNALNNQPPHIQQTDERFIEKILKTLRGDGNVLLPVDTAGRGL
ELLSILEQHWSQTHQTYPIYFLTHVSPDRIEYAKNFHEWMSDSIAKSFEDAHGNAFLLKH
VTLMINKSELEKVPEGPKIVLASMASLEVGSSHDIFTEWTTDANTLILFTEREQFATLAR
ALQAVPPPTAVKVTTRNRVPLVIEELTAFEQEQHRINNEEALKTCVSNAEDAKASNGSDV
KEGDPLFIDASNAHASAEVAIPNGAAHQDIFIDEFVFSDKIGCCGDCLIKVEKVGGDLDG
KLDEVAANPVLDSRPSKIVSNESTVQVNCSVVNMDFERRSDGMSIKSFLDRVAPQKLVLV
HGSTEATQHLKQHCLKNVCPHVYAPQVGETIDVTTYLCAYKGYTRGTLLVGVNIDNNTVV
LGCESRSNRQIADNELGLNIETEGYGEDRVEITRIKYAIEPHYAITCAGPIEALEGLYSD
MRKTSSFLEDTLEVPVNICQVAETLRSSLVRKESQIVDVEDYKFLMVGTQHDRVDNPGRG
LFSVDPGLRLLSVDRHSGVREIPPRSFASRGMGTALADSLLGDLNYDETPEAVAGKVYDV
IYRVSEAEPYVGGDVTVIIYRLGLPPQIQRYPQREFTLKYWEKKRVQELLGKEIFEVARE
ALLQVQPVQGH
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgggaattctagtaacaccactcagtggtgcttacaacgaagaccctctttcttacctg
gtttcaatagatggtttcaacatattgatcgattgtggttgtaatgatgtcttcgatacc
tctctactaaaacctctttctagtgtagcttccaaaatagatgcagttctgttatcgcat
ccagatataccgcatcttggggcttttccatatgccaagcatcatcttggactcactgct
caagtttattctactgaacctgttcggagactaggcctgttgaccatgtacgatcactat
tattcacaaaagcaagtttcaggttttgacctgttttctctggatgacattgattgtgcg
tttcgaagtattgagacactgaaatattctgagaatcatcacctgactggtaaaggagaa
ggaattgttattgctcctcatgtagtggggtatctattgggcagtacagtctggaaaata
acaaaagacggggaggatataatatatgctgtagactttaatcatccaaaacacttgaat
ggaactgtcttagagtcatttgtgcggccagccgttctgataactgatgcatacaatgct
ttaaacaatcagcctcctcatatacagcaaactgacgaaaggttcatagaaaaaatttta
aagacccttagaggggatggaaatgtactgcttcctgttgatacagcagggcggggtttg
gaacttctttcgatcttagaacagcattggtcacagactcatcagacgtacccgatttat
tttcttacacatgtctctccggataggattgagtatgcaaagaacttccatgagtggatg
agtgactcaattgcaaaatcttttgaagacgcacacggaaatgcttttcttttgaagcat
gttacactcatgattaacaagagtgagctggagaaagtacctgaaggcccaaaaattgtt
ttagcttcaatggctagcttggaagtgggatcttctcatgatatatttactgaatggaca
actgatgctaacactcttattcttttcactgagagagagcagttcgcaacgttagctcga
gcgcttcaggctgttccacctcctacagctgttaaggttactacgcgcaatagggttcca
ctggtaatagaagagttaacagcttttgaacaagagcagcaccgaataaataatgaagaa
gcacttaaaacttgtgtaagcaacgctgaagatgcaaaagcatctaatggatccgatgtt
aaagaaggtgatcccctgttcattgatgcatctaacgcccatgcttcagctgaggtggct
ataccaaatggtgctgctcatcaagacatctttattgatgaatttgttttttctgacaaa
attggttgctgcggcgattgtcttatcaaggtagagaaggttgggggagatttagatggc
aaacttgatgaagtagcagcaaacccagtacttgattcaagaccttcaaaaattgtttcc
aatgaatcgacggtgcaggtgaattgttcagtggttaacatggacttcgagcgtcgttca
gatggcatgtccattaaatcattcctagatcgtgtcgctcctcaaaaacttgtcttggtg
catggatcaacagaggctactcagcacttaaagcagcactgcttgaagaatgtgtgtccc
cacgtctatgctccccaggttggagaaacaattgacgtcaccacatatttatgtgcttac
aagggttatactcgcggcacgttactcgttggtgtcaacatagacaataacacagttgta
ttaggctgtgaaagcaggtcaaataggcaaattgctgataacgaactaggtctgaacatt
gagacagaaggttatggtgaagatagagttgagatcacgaggattaagtatgccattgaa
cctcattatgccattacttgcgctggacctattgaggcgttggaaggcctgtacagtgat
atgaggaagacatcatcgttccttgaagatacacttgaggtcccagtgaacatatgccaa
gtagctgagactcttcgttcttctttggtaaggaaagagagtcagattgttgatgtcgaa
gattacaagtttcttatggtgggtactcagcatgatagggttgacaaccctggccgagga
ttgtttagcgtagaccctggtctacgtttactcagcgtagatcgtcatagtggagtacgt
gaaatacctccacggtcatttgcatcaagaggtatgggaactgcactggcagatagtctt
ttaggagacctcaattatgacgaaactcccgaggcagtggcaggtaaagtttatgatgtt
atatatagagttagtgaggcagagccgtacgttggtggagatgtaacagtaattatctat
cgattgggtttaccacctcagatacagagatatcctcagagagagttcacgctcaaatat
tgggagaagaaaagggtgcaggagctcttaggtaaagaaatatttgaagtcgcacgcgag
gcattactgcaagtgcaaccggtgcagggacattag
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