Papaver somniferum (opium poppy): 113334459
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Entry
113334459 CDS
T05758
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113334459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psom03041
]
113334459
03009 Ribosome biogenesis [BR:
psom03009
]
113334459
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113334459
Spliceosome [BR:
psom03041
]
Complex A
U2 snRNP components
U2 related factors
113334459
Complex B
113334459
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
113334459
Ribosome biogenesis [BR:
psom03009
]
Eukaryotic type
90S particles
Helicases
113334459
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
ABC_tran
AAA_30
T2SSE
Flavi_DEAD
AAA_7
PhoH
FtsK_SpoIIIE
ATPase
AAA_29
TsaE
Motif
Other DBs
NCBI-GeneID:
113334459
NCBI-ProteinID:
XP_026436491
LinkDB
All DBs
Position
Unknown
AA seq
730 aa
AA seq
DB search
MSTERKRKVSLFDVVDETSVSAAAKLVKMNGFGGGLIHNNPLVNRWNGRPYSQRYMDILE
KRKTLPVWQQKDEFLQVLKNNQTLILVGETGSGKTTQIPQFVIDAVELENPGKRKKMMVA
CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAKTVLKYLTDGMLLREAMTDP
LLENYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQAYFSGAPL
MKVPGRLHPVEIFYTQDPERDYLEAAIRTVVQIHICEGPGDILVFLTGEEEIEDACRKIT
KEIGNQGEQVGPVKVVPLYSTLPPAMQQKIFDAAPPPLKEGGPAGRKIVVSTNIAETSLT
IDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISRASAHQRSGRAGRTQPGKCFRLYTEGS
FNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAL
DDEGNLTKLGEIMADFPLDPQMSKMLVVSPSFNCSNEILSVSAMLSVPNCFVRPREAQKA
ADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNARALKSADNVRQQLMRIMT
RFNLKLCSTDFNSRDYYINIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDH
KPEWVIYNEYVLTSRNFIRTVTDVRGEWLVDIAPHYYDLENFPQCEAKRVLERLYQKREK
DKENSKNKKQ
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacggagagaaaaaggaaagtaagtttatttgatgtagttgatgaaacatcggta
tctgctgctgctaaacttgttaagatgaatggattcggagggggtttaattcataataat
ccacttgtgaatcgatggaatggaagaccgtattcgcagagatatatggatattttggag
aaaagaaaaacacttcctgtttggcagcagaaagatgagtttttgcaggttttgaagaat
aatcagactttgattttggtcggtgaaactggtagtggtaaaactactcagattccccag
tttgtgattgatgccgtcgagttagaaaatccaggaaagcgaaagaaaatgatggttgct
tgcacccaaccacgtagggttgctgctatgtctgtttctcgacgtgttgctgaggagatg
gatgtgacaattggagaagaagttggttatagcatccgtttcgaagactgtagtagtgca
aaaactgttctcaagtacttaacagatggtatgctcttaagagaagctatgactgatcct
ctcttggaaaactataaagtgataattctggacgaggctcacgaaagaactttagcaaca
gatgtgttgtttggtcttctgaaagaagtcttaaaaaatagaccagatcttaaattggtg
gttatgagtgcaaccctggaggctgaaaagtttcaggcatacttcagtggtgcccctctt
atgaaggttcctggaaggcttcatccagttgagatattctacactcaggatcctgagaga
gattaccttgaagcagcaattcgtacagttgtgcagatacatatatgtgagggtcccggt
gacattcttgtttttctaactggagaggaagagatagaagacgcatgtcggaaaataact
aaggaaataggaaaccagggtgagcaagtgggtcctgtgaaagtagtgccactgtattct
actctccctccagcgatgcagcagaagatatttgatgctgctccacctcctttgaaggag
ggtggtcctgctggaaggaagattgtggtgtcgaccaatattgctgaaacttctctgact
atagatggtatagtttatgttattgatcctgggtttgcgaaacagaaagtctacaatcca
cgagtgcgagtggaatccttgttggtgtcaccaatatcaagggcaagtgctcaccagaga
tcaggtcgtgcaggaagaacacaacctgggaagtgtttcagactgtacacggagggaagt
tttaataatgatcttcagccgcaaacatacccagaaatattgaggtcaaatcttgcaaac
accgttcttaccctgaagaaacttggaattgacgatctggtgcattttgattttatggat
ccacctgctcctgagacattgatgcgtgcgttggaggtgttgaactatctgggtgctttg
gatgacgaaggaaaccttactaaattgggggagattatggctgattttccgctggatcct
caaatgtcgaagatgcttgttgttagtccaagctttaattgttccaacgaaattctctca
gtttcagctatgctttcagtacccaattgctttgtccggcctagggaggctcaaaaagct
gcagatgaagcgaaagctcggtttggccacattgatggggaccatctcacacttttgaac
gtgtatcacgcctacaagcaaaacaatgaggacccttcgtggtgttatgataactttgtc
aatgctagggcgctgaagtctgctgataatgtgaggcaacaattaatgcgcatcatgacc
agattcaacctcaagctatgcagcacagatttcaacagccgtgactactacatcaacatc
aggaaggctatgctgtccggttatttcatgcaagtagctcaccttgaacgtacaggacac
tatctaacagtgaaagataatcaggttgtccatctgcatccatcaaactgtctggatcac
aagccggagtgggtcatttacaatgagtacgtgttgactagcaggaatttcattcgtacc
gttacagacgttcgcggagagtggcttgttgatatagcaccccattattatgatctggag
aactttccacagtgtgaggcgaagcgcgtcctagaaaggctttaccagaaacgagagaag
gataaagaaaacagcaagaacaaaaagcagtag
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integrated database retrieval system
