Papaver somniferum (opium poppy): 113335758
Help
Entry
113335758 CDS
T05758
Name
(RefSeq) phytochrome A1-like isoform X1
KO
K12120
phytochrome A
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
113335758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
PAS_9
PAS_4
HisKA
PAS_8
YceG_bac
Motif
Other DBs
NCBI-GeneID:
113335758
NCBI-ProteinID:
XP_026437558
LinkDB
All DBs
Position
Unknown
AA seq
1144 aa
AA seq
DB search
MSSSRPSRSSSSNSSSNSKGDARIIAQATIDAKLQSEYEESGGTSFDYSRSVTLASNQYR
PDQNQQPPRSDKVTAVYLQQLLKLKFIQPFGCLLAIDEKTFKVIAYSENAPEMLTMDSHA
VPSDDSHIPLLGIGTDLRIIFTTSSASALYKALGFPDVSLLNPILIHCKTSGKPLYAILH
RLTGSLIIDFEPVMPYEVPMAGSGALQSYKLAAKAIARLQSLPSGSMERLCDTVVQEVFE
LTGYDRVMMYKFHEDDHGEFVAEVTKPGLESYLGLHYPATDIPQAARFLFVKNRTRMICD
IRAKHAKVIQDDKLPFDITLCGSTLRAPHSCHLQYMKNMDSGASLVMSVVINDGDEQKQD
GSGSAQPQRRQRLWGLVVCHHTTPRFVPFPLRYACEFLTQVFAIHVIKEFELENQMVEKH
ILRTQTLLCDMLMRDAPLGIISQNPNVLDLVKCDGAALFYKNKIWRLGMTPNDFQIHDIA
SWLSEYHADSTGLSTDSLYDAGYPGALSLGDAVCGMAAVRITSKDMLFWFRSHTAAEIRW
AGAKHIPGEKDDERVMHPRSSFKAFLELVKTRSAPWKDFQMDAIHSLQLILRNAFSEMDA
KDEHPSVLIHSKLNDLKLEGVEELEAVTNELVRLMETATAPILAVDVDGLINRWNTKIAD
LTGLPVDQVIGLHLLTLVEDSSVIAVKKMLHLALQGKEEQNVHFEMKTHGSRKDNGPVSL
VVNACASKDIWENVVGVCFVAQDMTSQKKAMDKFTRIEGDYKTIVQNPSALIPPIFGTDE
SGWCSEWNPAMTKLTGWSRDEVIGKMLLGEVFGNHIGCCPLKNQEAFVNFGVILNNAMMG
EEAERVQLGFIARNGKHVDCLLSVTKKMDAEGTLTGLFCFLQTASQELQQALHVQRISEQ
TAIKRVKELTYIKKQIKNPLSGIIFSRKMIEETELDDEQKQLLHTSMHCQRQLNKVLDET
DFESIMDGCLDLEKVDFTLQEVLLTSISQLMIKSSEKGIRLTLSTSEEIMAERLYGDSVR
LQQVLADFLLVSVNYTPNGCQLEIAVRMTKDRLLERVHLAHLELRITHSGDGVPEELLSE
MFENYTTGHETKTPPVVSEEGISLVVSRKLLRLMDGDVRFLREAGKSSFIISLEIVASTP
NKKT
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgtctaggccaagtcggtcatcttcgagcaattcatcaagcaattcgaagggt
gatgctaggatcatagcacaggccacaatagatgctaagctccaatctgagtatgaggaa
tctggaggtacttcttttgactactctagatcagtaactctagcctctaatcaatataga
cctgatcaaaaccaacaaccacctaggtctgataaagttactgctgtatacctccagcag
ctcttgaaattaaaatttattcaaccattcggttgtctattagcgatagatgaaaaaaca
ttcaaagtcattgcttacagtgaaaatgcacctgaaatgttaaccatggatagtcatgct
gtcccaagtgatgacagccatattcctcttcttggcattggtactgatcttagaatcatt
ttcactacatcaagtgcttctgctctttacaaggctttggggtttccggatgtttcgtta
ttgaatccgatcttaattcactgcaagacttctggaaagcccttgtatgcgattctgcac
agactcactggtagcttgattattgatttcgagccggtaatgccttatgaagttcccatg
gctggttctggtgcactacagtcgtataagcttgccgccaaagcgattgcaaggttgcag
tctctgcccagtgggagtatggaaaggctgtgtgatacggtggttcaggaagtgtttgaa
cttactggttatgatagagtgatgatgtataagtttcatgaggatgatcatggtgagttc
gttgctgaggttacgaaacctggtctcgaatcttatctgggtttgcattatccagccacg
gacattcctcaagctgctcgatttttgttcgtaaagaacagaacccgcatgatatgtgat
attcgggctaagcatgctaaggtcatccaggatgataaattaccgttcgatatcaccttg
tgtggttcgacacttcgagctccacatagttgccacttgcaatacatgaaaaacatggat
tcaggtgcgtctctggttatgtcggttgtaatcaatgacggtgatgagcaaaaacaagat
ggttctgggtctgcacaaccacagaggcggcaaaggctttggggactagtcgtgtgtcat
cacacaactccaagatttgttccttttcctttaagatatgcctgtgagtttttaactcaa
gtatttgccatccatgttatcaaggagtttgaattggaaaatcagatggtcgaaaagcac
attttacgtacccagacactcttgtgtgatatgttgatgagagatgcacctttgggtatt
atatcacagaatcctaatgttctggaccttgtaaaatgtgatggtgctgcactattttac
aaaaataaaatctggcgtcttggaatgacaccaaatgatttccagatacatgatattgcc
tcttggctatccgagtatcacgcggactccacaggtttgagtaccgatagtttatacgat
gcggggtatccgggggctctctcacttggtgacgcagtttgcgggatggctgctgtgagg
ataacctcaaaagatatgcttttctggttccggtctcacactgcagcagagattcggtgg
gctggggctaagcacataccaggcgagaaggatgatgagagagtaatgcaccctagatct
tcatttaaggcattccttgaattggttaagacaagaagtgcaccttggaaggattttcag
atggatgcaatccattctttgcagcttatcctcaggaatgctttcagtgagatggatgcc
aaggatgaacatcccagtgtgttaatccattcgaagctcaatgatcttaaacttgaaggg
gtggaggaattggaggcggtgacaaatgagctggtccgtttgatggagacagccacggcg
ccgatattggctgttgatgttgatggactcattaacaggtggaatacaaaaattgcagat
ttgactggtctccctgttgatcaagtcattgggctgcatttgctcacactggtggaagat
tcttcggttattgcggtcaagaagatgttgcacttggctctacagggtaaggaagagcaa
aatgttcattttgagatgaaaactcacggttctcgcaaagataacgggcctgtcagctta
gttgtgaacgcttgtgcaagcaaagatatttgggagaatgttgttggggtttgttttgtg
gcacaagatatgaccagtcaaaagaaggccatggacaagttcactcggatcgaaggagat
tataaaacaattgtgcagaacccaagtgcacttatacctcctatatttggcacagatgaa
tctggctggtgctctgagtggaatccagcaatgaccaagttgactgggtggagccgggat
gaagtgattggtaagatgctactaggtgaggttttcggtaatcatatcggatgctgtcct
ctcaagaaccaggaggcatttgtgaacttcggggtcatactcaataatgcaatgatgggt
gaagaagccgagagagttcagcttgggtttatagcgcgtaatgggaagcatgtagattgc
ttgctgtccgttaccaagaaaatggacgcagagggtactctaactggactcttttgcttc
ttgcagactgctagtcaagagctgcaacaagcacttcatgttcaacgtatatccgaacaa
actgcaattaaaagagtgaaggagttgacttatataaagaaacagataaaaaatcctctc
tctgggattatcttttccaggaaaatgatagaggaaactgaattggatgatgaacagaag
caacttttgcacacaagtatgcattgtcaacgccaactgaataaagttcttgatgaaact
gattttgagagcatcatggatggttgtttggatttggaaaaggttgacttcactctgcaa
gaagtgttgcttacttccataagtcaacttatgattaagagcagtgaaaagggtatccgc
cttactcttagtacatcggaggagatcatggctgaaagactctacggagacagtgtgagg
cttcaacaggtcctggctgatttcttattggtttctgtgaactacactccaaatggctgt
cagcttgagattgctgtcaggatgaccaaagatagactgttagaaagggttcatcttgct
catctagagctcagaatcacacattcgggagatggggtacctgaagagctgctgagtgag
atgtttgaaaactacactactggtcatgagacaaaaactccacccgtggtttcagaagag
gggattagcctggtggtgagccggaagttgctgaggctcatggacggtgatgtgcggttt
ctaagagaagcggggaagtcatctttcattatatcacttgagattgttgcctcgactccc
aacaagaagacctag
DBGET
integrated database retrieval system
