Papaver somniferum (opium poppy): 113336871
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Entry
113336871 CDS
T05758
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113336871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113336871
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
113336871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR
Kgd4-YMR31
Motif
Other DBs
NCBI-GeneID:
113336871
NCBI-ProteinID:
XP_026438349
LinkDB
All DBs
Position
Unknown
AA seq
541 aa
AA seq
DB search
MSFDLQLKPSCGGCGSTSDLYGSNCKHMTLCLNCGKRMTENRAKCYDCGTQITRLIREYN
VRACSTSDKNYFIGRFVSGVPGFSKKKNADNKWALRKEGLAGRQVTDTLREKFKNKPWLL
EDETGQFQYHGHLEGAQCASYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM
KNRRKTADGYERWMMKVANSGAATFGEVERDEKEAGGSRGGRKKTNDDEDEGNVSDKGDE
DEEEEAQRKNRLGLNKKDGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVGND
PEEREDLAPEVPAPPEIKQDEDDDDEANEEEGGGLSKSGKELKKLLGRSAGMNDSDAEEE
DDDDDEADDDVSMSPVLAPKKKDTPKEEPVDTPAKAAPSGSTRATPSTTSKSTKSKRKAS
GDDGKVANSAPLKKVKAENESKSSAKEGSASASKVNNAIPSRSSASSSAKAPADQSTGPV
TEEEIRAVLVQGARVTTQDLVAKFKARLKSKEDKDAFAAILRRISKIQKFNGANYVVLRD
K
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttgatttacagctaaagccatcatgtggaggttgcggatccacttctgatctc
tacggaagcaattgcaagcatatgacactctgcttgaactgtggaaaacgaatgactgag
aatcgtgctaagtgttatgattgcggtactcaaatcactcgattgattagggagtataat
gttcgagcatgttctactagtgataagaattactttattggcagatttgtttcaggagtc
ccagggttttctaagaagaaaaatgctgataataaatgggcgctccgaaaagagggactt
gcggggcgtcaagttacagataccttgcgggaaaagttcaagaataaaccttggcttttg
gaggatgagacaggccaatttcagtatcatggacaccttgaaggtgcacaatgtgcaagt
tactatctgttaatgatgcaagggaaggagtttgttgctattcctgctggttcctggtac
aactttaacaaagttgcacagtataagcaactaaccctggaagaagctgaagagaagatg
aagaacaggagaaagactgctgatgggtatgaaagatggatgatgaaagtagcaaatagt
ggagcagctacttttggtgaagtggagagggatgagaaggaggctggtggatctagggga
ggacgtaaaaaaacaaatgatgatgaagatgaaggcaatgtctcagataagggggacgag
gatgaagaagaggaagcacaaaggaaaaatagactcggactcaacaagaaagatggcgat
gatgatgaagaaggtccaaggggaggtgatcttgacatggatgacgacgatattgagaag
ggcgacgactgggaacatgaagaaatattcactgatgatgatgaagctgttggtaatgat
cccgaggaacgagaagatttagctccagaagttcctgctcccccagaaatcaagcaggac
gaagatgatgatgatgaggctaatgaagaggagggtggtggactgagcaaatctgggaag
gagttaaaaaagctgctaggacgttcagctggaatgaatgattcagatgccgaagaggaa
gatgatgatgacgatgaagcggatgatgatgtgagcatgtcacctgtgttggctccaaaa
aagaaggatacacctaaagaagaacctgttgacactcctgcaaaagcagcgccatcggga
tctactcgtgcaaccccatctactacatccaaatctacgaagtcaaagagaaaagcatct
ggggatgatggtaaagttgccaatagtgcacctttgaaaaaggtgaaggcggaaaatgaa
tcaaaatcttctgcaaaagaggggtctgcatcggcttccaaagttaacaacgccataccg
tcaaggagttcagcttcgtcttccgccaaagctcccgcagatcaatctactggccctgtt
accgaggaagaaatcagggctgtcttggtacaaggtgctcgagtaacgacccaagacctc
gtggcaaaatttaaagcaaggctgaagtcaaaagaggacaaagatgctttcgctgcaatt
ttgaggcgcatttcaaagatacagaagttcaatggggccaactacgtggtattaagggat
aagtaa
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