Papaver somniferum (opium poppy): 113338946
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Entry
113338946 CDS
T05758
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113338946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psom03041
]
113338946
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113338946
Spliceosome [BR:
psom03041
]
Complex A
U2 snRNP components
U2 related factors
113338946
Complex B
113338946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
Motif
Other DBs
NCBI-GeneID:
113338946
NCBI-ProteinID:
XP_026440120
LinkDB
All DBs
Position
Unknown
AA seq
861 aa
AA seq
DB search
MAGNKLVAALFSGEDWTEFYWIFFMDTDWNGPDLVKQGIAAKKGIKSSDIWSLPETGKRS
YLRQQGMNLRPVLSKFGSYARKQGTNLTRILLSKNKRRVWIIQEGGEVIMQDRISEALVL
DQQRMADKSNKRKRVEDEDPLDVYMTSMVLPEIEKLKNTASHSSFSSKIDDKYDEEEDDV
DYDDDRVENNKKKVDKLPALVIDHSKVEYPSFRKNFYIQVKEISSMPPQEVGNLRKELEL
KLHGKDVPNPIKTWVQAGLSTKVLQVIKEKLGYEKPMSIQAQALPVIMSGRDCIGIAKTG
SSKTLAFALPMLRHIQAQSAIVPGRDGPIALIIAPTRELVQQIHKDIMKFAKVMGIRSVP
VYGGSQTNKQINAVKNGTEIVICTPGRMIDFLCKNNGRMINLSKVTYLVLDEADRMFDMG
FEPQITHIVQSTRPDRRTVLFSATFPRRVEQLARQILTKPVEIQVGGRNVVNKDISQLVE
VRPESERFLRLLELLGEWYEKGKILIFVQSQATCDTLLKNLFSHGYACLSLHGAKDQMDR
ESAISDFRNDVCKLLIATSVAARGLDVKELELVINFHVPNHYEDYIHRVGRTGRAGRKGC
AITFIAEDEARYAPDLVKALELSAQAVPEDLRALADGFMAKVNQGLEQAHGTGYGGIGFK
FNGEEDEAKKAEKKAQARGYGLGEEDCSDSDIESGDESTQEASIVPELLPDVSCDHKPGV
PLVVHPPAFLPNGAAQLAALKAAARQNLEKILRNVMPKHYTAEFEINDYPQIVRWKVTHR
ETLGPISEWTGASITTKGQYYPPRMSPKPGDERKLYLSIEGLTESSVQKAMAELERVAED
FRKKEHLLPGASLQGKYSIVP
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaaacaagctggttgctgcgttattttccggtgaagattggacagagttttat
tggattttcttcatggatacggattggaatgggcctgatttagtgaaacaagggatagct
gcaaaaaagggaatcaaatcttctgatatttggtctttaccggaaacaggaaaaagaagt
tatttgcggcaacagggaatgaatctcagacctgttttgagtaaatttggaagttatgcg
cggaaacagggaacgaacctcaccaggattttattgtctaagaataaaaggagggtttgg
ataattcaggaaggaggtgaagtgataatgcaggatagaatctctgaagctttggtgctt
gatcaacaaaggatggctgacaaatcaaacaagcggaaaagggtcgaagatgaggatcca
ttagatgtttacatgacttctatggtgctgccagagattgaaaaattgaagaacacagca
tctcattcctccttttcttccaaaatcgacgacaaatatgacgaagaagaagatgatgtt
gattatgatgacgatcgtgtagagaacaacaagaaaaaagtggataaactacctgcgctt
gttattgatcactcaaaggtggaatacccttcctttcgaaagaatttttacatccaagtc
aaagagatatcaagtatgcctcctcaggaagtcggtaatttaagaaaagaacttgaatta
aaattacatggaaaggatgtgccgaatcccattaagacatgggtacaagctggattgtcg
accaaagtattgcaggtgataaaggagaaactcggttacgaaaagccaatgtcaattcaa
gctcaagcattgcctgttattatgagtggtcgtgactgcattggtatagctaaaacaggc
tcgagtaaaacgctagcttttgctctaccaatgttgaggcatattcaagctcaatcagct
attgttccagggagagatgggccaattgcgcttattattgctcctactagagaactagtg
cagcagattcacaaggatatcatgaagtttgctaaagtaatgggtatccggtctgttccg
gtttatggaggctcacaaaccaacaaacagatcaatgccgtaaagaatggaaccgagatt
gttatttgtactccgggtaggatgatcgactttctatgtaaaaataatgggagaatgatt
aaccttagcaaggttacttatcttgttttggatgaggctgacagaatgtttgacatgggt
tttgaacctcaaataactcacattgttcaaagtacacgacctgatcgccggactgtgctc
ttctctgccacatttccccgcagagttgagcaactggcacgccagatactgacaaagcct
gtggagatacaggtaggaggaaggaatgtagtgaacaaggatataagccagttggttgag
gtgagaccagagagtgaaaggttcctgaggttattggagctacttggagaatggtacgag
aagggtaagattttgatttttgttcagtcgcaagctacatgtgatactttgttgaagaat
ctatttagccatggatatgcttgcctctcacttcatggagccaaggaccagatggatcgt
gagtcggcaatttcagatttcaggaatgatgtctgtaagttattgattgccacaagcgtt
gctgctaggggattagatgtgaaggagcttgaactggttatcaactttcatgtcccaaac
cactatgaagactacatccatcgtgttggtaggacaggtcgagctgggaggaaaggttgt
gccattacattcattgcagaggatgaggctagatatgcgccggatcttgtgaaggccttg
gaactgtctgcacaagctgttccggaagatcttagagctctcgctgatggattcatggct
aaagttaatcagggacttgaacaggcacatgggactggttatggtggaattgggtttaaa
ttcaatggagaggaggatgaagccaaaaaggctgaaaagaaagcacaggcaagaggatac
gggcttggggaagaagattgttctgattcggatatcgaatctggtgatgaatccacccag
gaggctagcatagtgccagaactgttgcccgatgtttcttgtgatcataaacctggcgta
ccgttagtggtgcaccctcctgctttcctaccaaatggggcagctcaattagcagcactg
aaagctgctgctagacaaaacctagaaaagattctgcgcaatgtcatgcccaaacactac
acagcagagtttgaaattaatgattacccacagattgttcgctggaaggtgactcatagg
gaaactttgggtccgatatccgaatggacgggagcttccataactaccaaggggcaatat
tatcccccaagaatgagtcctaaacctggagatgagcgcaagctttacctgtcaatcgag
ggactaacagagtcatctgtacagaaagccatggctgaactggaacgagttgcagaggat
ttcagaaaaaaagaacatttgcttcctggtgcatctcttcaagggaagtactctattgtg
ccataa
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