Papaver somniferum (opium poppy): 113339918
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Entry
113339918 CDS
T05758
Name
(RefSeq) endoribonuclease Dicer homolog 3a-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
psom
Papaver somniferum (opium poppy)
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
psom03036
]
113339918
Chromosome and associated proteins [BR:
psom03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
113339918
microRNA pathway
RISC loading complex
113339918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
ResIII
Helicase_C
PAZ
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
113339918
NCBI-ProteinID:
XP_026440926
LinkDB
All DBs
Position
Unknown
AA seq
1681 aa
AA seq
DB search
MDSSSTMDISTGIINPLKRKFQDMEESSNPNGLINSGGDDSDQKELNLDLNIKDVDIRSY
QRKVFEVAVRRNTIAVLDTGSGKTMIAVMLIQHIGMNKEDGKLMIFLAPTVHLVTQQAEV
LRINTDFKVEEYYGAKGVDVWTAEHWENERKKNDVMVMTPQILLDAMRKAFLSLDNVRLL
VFDECHRTTGNHAYAKIMKEFYHRSANKPKIFGMTASPVTKKGNSSAENCNDQMASLESV
LDSKIYTVEDRNEVELFVPSAKEIKRYYDPSKFSHEDLKTQLKSSWSKFDSLLVKAQNLK
SSQFRDVDETFKALKKKLSSYYLKIVYCLEDLGLLCAHEAAKVSIESICVSDISMECELY
QECFVQCRYFLEEVLLILEKSLPPGSDKLFNIESSISDASKKGYITPKLYGLVQTFQSFG
DVKDLLCLIFVERIITAKVIERFMRKVSYLSHFTVAYLTGGNGAMDALKPKVQKETLDAF
RSGKINLLFTTDVAEEGLHIPNCSRVVRFDLPKTVRSYVQSRGRARQSDSQYILMLERGN
TIQRDLLFDVIKSEQSMTSAASHRDPDAGITKLCCGEETEPYYVESTGASVTVDSSVSLI
YRYCEKLPGDKYFSPKPIFQLSLFGGAYECILILPPNAPFQRLVGPSVINSHLSKQLVCL
EACKKLHQMGALDDHLLPCIEEPLENDLIKSNKPYSSAAGTTKRKELHGTTIVRALSGFW
AENLNGVTLHAYKLDFACDQVDVFYSSFVLLLEPKLDDDVANAEVELFSIPNKLIKSSVT
PCGQFHLDMEQVKKAKIFQELFFNGLFGKLFVGSKSTGIKREFLLKKDTSSFWSNSNLYM
LLPLESTVPSHESLRINWGEISASNSAVEFMKTHSVEDNNCSSNSNTDNSSFGTECKSSE
DSINLADCSVDKNSVKDMVVLAIHTGKLYSVLEVMADKSSETSFDGNTDEAPSSYTSFRD
YFSKKYGIELKHPEQPLFLLKQSHNPHNLLLTKDTYEGAPTNKKKKKGSSNRMVEKPLFT
IHMPPELLVKVGVSISVLKSFYLLPSLMHRLESLMLANQLREEISCPSNSTLISSTLVLE
AITTLRCCEKFSLERLELLGDSILKYAVTCYLFLKYPGKHEGQLSSQRSHAVCNLTLHKC
GTNRKIQGYIRDSAFDPRRWVAPGQRSIRAPVPCLCGVDTCEVPLDSRYETDDASVMVGK
PCDSGHRWMCSKTIADCVEALIGAYYVGGGLSAAFHVMKWLGIPCEFEPSLVDEAINKAC
LLCPAPKVDEFNMLESKLGYNFSVKGLLLEAITHASYQQEVGVGFCYQRLEFLGDSVLDV
LITLHLFENHTDVDPGELTDLRSASVNNENFAQTVVKHNIQQHLHHSSGLLCEQITAYAQ
SVQKSKKTQGIKCPKALGDLLESITGAVLLDTKLNLDIVWKVFKPLLSPIVTPEKLELPP
YRELIELCSHYGFSLKDTLTKNGEMVHAELRLQTKDVLLIREGSDRTRKTAKGQAAVHLL
KDLEARGILHVRYDYMEKAHETQSREGSPTNMNIDICQKSNVENYAGPVSKKIKTAEGAI
PVKPTSDKSSSEDSLVNVIINMKKGGPRTSLYELCKSLQWSTPTFQFEEYKSKTEMIFGE
GSERRTGFNAYTSTITLNIPNSDAIKLAGEQRADKKTSMDSAALRMLYELGRLGKCLITN
L
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggattcttcatcaacaatggatatctcaacagggataataaaccctttgaagaggaaa
tttcaagacatggaagaatcatcaaaccctaatggtttgatcaatagtgggggtgatgat
tctgatcaaaaagagcttaatttggatttgaacatcaaagatgttgatataagaagttat
caaaggaaggtatttgaagtagctgtgaggaggaatacaattgctgtattggatactggg
tctgggaaaacaatgattgctgttatgttgattcagcatattgggatgaataaagaagat
gggaaattgatgatttttcttgctcctactgttcatcttgttactcagcaagctgaagtg
ttaaggatcaacacagactttaaagtggaggaatactatggagctaagggggttgatgtg
tggactgcagaacattgggagaacgaaagaaaaaagaatgatgtaatggtaatgacccct
cagattctattggatgctatgaggaaagcattccttagtctagataatgtgcgtctactg
gtgtttgacgaatgtcatcgtaccactggaaaccatgcttatgcaaaaataatgaaggag
ttctatcacaggtctgcaaacaagccaaaaatatttggaatgaccgcttcccctgttaca
aagaaaggtaattcgtctgcggaaaactgtaatgaccaaatggcttcactagaaagcgtc
ttagactccaagatttatacagtagaagaccgaaatgaagtagaactgtttgttccttcc
gctaaagaaatcaaaagatactatgaccctagcaagttctctcatgaagatttgaaaaca
cagctgaaatcttcctggtcaaagtttgacagtttattggttaaagcacaaaatttgaag
tcaagtcagtttagagacgttgatgaaacatttaaagcattgaaaaagaagttgtctagt
tactatctgaagattgtatattgccttgaagatcttggccttctatgtgcacatgaggct
gctaaagtctccatagaaagtatttgtgtttccgacatttcaatggagtgcgaattgtat
caagaatgttttgtgcagtgtagatactttcttgaagaggttttgcttatacttgaaaaa
tctttgccgcctggtagtgacaagcttttcaatatagaatctagcatttcagatgcatct
aaaaagggttatataactcccaagttatatgggctcgttcaaacatttcaatccttcggg
gatgttaaagatttactctgcctaatctttgttgaaaggatcatcacagcaaaagtgatt
gaaagatttatgaggaaagtaagttacctatctcatttcacagttgcatatctgactgga
ggaaatggtgcgatggatgcactgaaaccaaaagtacagaaagagactttggatgcattt
cgctctgggaagataaacttgttgttcactactgatgtggctgaggagggactacatata
cctaattgctcccgtgttgtaaggtttgatctacctaaaacagttcgtagctatgttcag
tctcgtggtcgagctcggcagagtgattcacagtacatcttgatgcttgaaaggggaaac
acaatccagagagatttgttatttgatgttatcaagagcgagcaatctatgacatctgcc
gcttcacatagagatccggatgctggcattactaagttatgttgcggtgaagagactgag
ccttattatgtggagtctactggagcatcggtgactgttgattctagtgttagtctcatc
tatagatactgtgaaaagctacctggagacaagtacttttctccgaagcctatttttcaa
ctttcattatttggaggcgcctatgaatgtatattgattttaccccctaatgcgccgttt
caaagattagttggtcctagtgttataaattcacacttgtcgaagcagttggtatgtctt
gaagcatgcaagaaactacatcaaatgggagctcttgacgatcatctccttccttgtatt
gaagagcctctggaaaatgatctcatcaagagcaataaaccttattcttcggctgctggg
acaacaaaaagaaaagaattacatgggacaacaattgtccgtgctttatctggattttgg
gcggagaatttgaacggcgtcactttgcatgcatataaattagattttgcttgtgatcag
gttgacgtattctactctagctttgttctcttgcttgagccaaaactagatgatgatgta
gcaaatgctgaggtggaacttttttcgatccctaacaagttaatcaagtcttctgtgacc
ccatgtggacaattccacctggacatggagcaggtgaagaaagcaaagatttttcaggaa
ctttttttcaatggtttatttggaaagctttttgttggatcgaaatcaactggaattaaa
agagaattcttacttaagaaagacacaagctctttctggagcaattcaaatttgtatatg
cttttaccgcttgaatcaactgttccaagtcatgaatctttgagaatcaactggggagaa
attagtgcaagtaactcagcagttgagtttatgaagacacattctgtggaagataataac
tgttcctccaattctaatacggataattcatcatttgggactgaatgcaagagctcagaa
gattccatcaatttggctgattgttcagttgataaaaactcagtaaaagacatggtcgtc
ttggcaattcacactggaaaactttattctgtccttgaggtgatggctgataaatcttct
gagacttcatttgatggaaacacagatgaggctccatcaagctacacttccttcagggat
tactttagtaaaaagtatggcattgagctgaagcatccagaacagcccctgtttttattg
aagcaaagccataacccacacaatcttcttcttacaaaggatacttatgaaggtgctcca
acgaacaagaagaaaaagaaaggtagctctaacaggatggtagagaagcccctgtttact
attcacatgcctccggagcttctagttaaagtcggtgtatcaataagcgtcttaaaatct
ttttacttgctaccatctttaatgcatcggctggagtctctaatgctggccaaccaactt
agagaagaaatttcttgtccttctaacagtaccctcatatcaagcactctggtactggaa
gcaattactacactcaggtgttgtgaaaagttctctctcgagcgcttggaattgttgggt
gattccatactgaaatatgctgttacttgctatctatttctcaaatacccggggaagcat
gaagggcagttatcttcccagagatcgcacgccgtttgtaacttaacattacataagtgt
gggacaaaccgaaaaatacagggctatatacgagacagtgcgtttgatccacgtcgttgg
gtcgctccaggacaacgttctatacgtgcacctgttccttgtctttgtggcgtagatact
tgtgaagtgcctttagacagtagatatgaaactgatgatgcctctgttatggttggaaag
ccttgcgatagcggtcacaggtggatgtgctccaagactatagcagattgtgttgaagca
ctgataggagcatactatgttggtggtggattaagtgctgcattccatgtgatgaaatgg
ttaggtatcccttgcgagtttgagccatcattagttgatgaagccatcaataaagcatgt
ctgttatgtcctgcgccaaaagtggatgaattcaacatgctagagtcaaaacttggatat
aacttttccgtcaagggtcttttgttggaagcaattacacatgcatcttatcagcaagaa
gttggggttggtttttgttatcagagacttgaatttctcggcgattctgtgctggatgtg
cttattactttgcaccttttcgaaaaccacacagatgttgatccaggggagttgactgat
ttacgttcggcttctgttaataacgaaaattttgctcaaactgtcgttaagcataatatt
caacaacatcttcatcactcttctggacttctatgcgaacaaataacagcatatgcacag
tctgtccagaagtccaagaaaacccaaggaattaaatgccccaaagctcttggagacttg
ttagagagtataacaggggcagttttattggacactaaacttaaccttgatattgtctgg
aaagtatttaaaccactactctctccgattgttacacctgagaaacttgagttgcctcca
tatcgagaactaattgaactatgtagccattatgggttctctttaaaagacacattgaca
aagaatggggaaatggttcatgctgagcttcgcttacaaacaaaagatgttctgttgata
cgagagggatctgatagaaccagaaagactgctaaaggccaggcagctgttcatttatta
aaagacttggaggctagaggcatcctccatgtacgatatgattatatggaaaaggctcat
gaaacacaatctcgcgaaggttcccctactaacatgaatatcgacatctgccaaaagtca
aatgttgaaaattacgctggccctgttagtaaaaagataaagacagcagaaggcgcaata
cctgtgaaaccaacttctgacaaatccagttccgaggactctttagttaatgtcataatt
aatatgaagaaaggaggtccccgaacatctctttacgagctctgtaaaagtttgcagtgg
tcaacgccaacattccaattcgaagaatacaagtccaaaactgaaatgatatttggtgaa
ggttcagaaagacggacaggttttaatgcctatacgtcaacaataaccttgaacataccg
aactcagatgctattaaattggcaggtgaacaaagagctgataagaaaacttctatggat
tctgcagcacttcgtatgctttacgaacttggtagactagggaaatgcttgatcaccaat
ctgtaa
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