Papaver somniferum (opium poppy): 113340652
Help
Entry
113340652 CDS
T05758
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113340652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psom03400
]
113340652
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
113340652
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SAWADEE
ResIII
Motif
Other DBs
NCBI-GeneID:
113340652
NCBI-ProteinID:
XP_026441558
LinkDB
All DBs
Position
Unknown
AA seq
1426 aa
AA seq
DB search
MSSTTTKKRSLYKPQHPIDVSPFEAYYGSSWWPVKSLSIRKGELDVHLESPDEVGVTEKI
PVGNLRMRSRRATVSDCMCFLRPGVDICILSKDSGEEKVWIDAKVNSIARTPHESGCTCR
FFVNLFRKRVPSDMRWWTLNKEIMEVTIDDIAVLQQLDGKPSEDEYHRWSYLKDCPSRND
AKLLRLQFSCDLSWMLVASTLKGFDFKILSMRRKIFYQFLEDNQDICSTGSDKALKFVNF
YMDDDVFKPNILTIVPESALISSDQENTSMDDSLDDQLELRRSGRKSIQPERYVGNPWSS
NVKSAKRTARVREVDEEPWEMSSEDNDWWDEPIVRTERTHDTIPNLRTERKRDTIRNLRT
ERKHDSIRSSNLQLVTYEVKTGSMDQPTVGIKRNHENMQASNLELVPSQINIGGIDQPVA
LDMKTNDDCMHGSDEMESSTEQLGGDVISVKRPRYADPPVVYETSREKKDLCKQQVQHCD
SISKQSKDYFMSRMNRYSNLNNSASNIDSSQAEQRKAENKEEGGPSVSSKSSKGEKDLCE
KVQHCGSISKKSKEYFASSLTKFSHLASKCDTDSFEEVQRKAKLARKKRVLECLLKEKVV
SHEAPKSKTPSFGSRTRYTYEPGAYYQRKYMSPSDYRSEIHRCMKNINSEIAKSQSCSEP
QWKHVSEAIPSMRWKDICKEKSEDKQENENEEQEDLDSLWKEMDFANNSFDFAGGNQGNN
ADSCEGKESDCDKASCQHEYHLDEEIGLICLLCKSVVTEIRDMSLPFLQDKGWSRCEAQW
KVKNDMKGPDINTTKFDIFRNPDSARNISVQELREQNESVWALIPDLRDKLRAHQKKAFE
FLWKNIAGSMIPSEMEDACDSAGGCVISHSPGAGKTLLVIAFLESSLRLFPGQRPVILAP
NTTVYTWKKEMKKWKVPIPVYQIHSYQNYRLEYQSLTVGGRRVNQDVMHAVDCLDKLRKW
HEHPSVLLMSYPCFLSLMREQSKHEYWRYMGGVLRESPGLLILDEGHNPRSSHSMLRRFL
MEVKTELRILLSGTLFQNSFDEYFNTLSLARPRFISEVLRELDPLYGVKNRKGYRRKDTK
RCKEILARKFFVDKIGRRIHSKYDEDRKKGLNKLKQLTTGFVDVYEGDGSDCLPGLQAYA
LLLKPTPAQDKAMLKLLEYDCGTRYSLEYELTITLVSIHPWLLTSLECLDKFFNDDERKE
LAGQRHDITRGSKVRFVVNLVQKCVHKREKVLIFCRNIAPMRYLMEIFKNMFNWAEGEEM
LILHGDQLVFQRTRMIDKFEDPGGNAQVLLASIGCCGEGISLTAASRVVLLDSEWNPSKI
KQAVGRAFRQGQEKIVYVYQLLTSGTVEEKKHSKTAWKDWVSRMIFVGNNAKNSSHAKAE
NIDDEVLREIVEEDESDLFHLIMKDEKLMDRKKNETTAVFHMKGTF
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgacgacaacgaagaagcgatccttgtataaaccccagcatccaattgatgtg
tcgcctttcgaggcgtattatggtagctcatggtggccagtgaagagcctgagtattagg
aaaggggaattggatgtgcatttagaatcccctgatgaggtgggtgtcaccgagaaaata
ccggtgggtaatttgcgaatgaggtcaagaagagcgacggtatctgattgcatgtgtttt
ttgaggcctggtgtagatatctgtatattgtcaaaggattcaggcgaagaaaaggtatgg
attgatgctaaggttaattcgattgcgaggacacctcatgaatctggatgcacctgccgg
tttttcgttaacttgttcaggaaacgtgtaccatctgatatgagatggtggacacttaac
aaagaaattatggaagtaacaattgatgatattgctgtcctccagcaacttgatggaaag
ccttctgaagacgagtatcacaggtggtcttatttgaaagattgtccttccagaaatgat
gctaagttgctccggcttcagttctcctgtgacctttcgtggatgcttgttgcgtctaca
ttgaaaggcttcgactttaaaatattgtcaatgcgaaggaagattttttatcaatttctt
gaagacaatcaagatatctgttcaactggctctgacaaggctttaaagttcgtcaatttc
tacatggatgatgatgtctttaaacctaatatcctaaccattgtgccagagtctgctttg
atatcatctgatcaagagaatacctccatggatgactcccttgatgatcagcttgaattg
aggcggtccggtcgaaagtctatacaacccgaacgttatgttggcaatccatggtcttcc
aatgtgaagagtgcaaaaagaacagctagagtaagagaagtcgatgaggagccatgggaa
atgtcttctgaggataatgactggtgggacgagccaatagtgcgtacagaaagaacgcat
gatactattcccaatttgcgtacagaaagaaagcgtgatactattcgcaatttgcgtaca
gaaagaaagcatgatagtattcgcagttcaaacttgcaactcgttacgtacgaagtcaag
accggcagcatggaccagccgacagtgggtataaaaagaaatcatgaaaatatgcaggct
tcaaacttagaactcgttccatcccaaatcaatattggcggcatcgaccagccagtagct
ctggatatgaaaacaaatgatgattgtatgcacggttcagatgagatggagtcaagcaca
gaacagctaggtggagatgttataagtgtaaagcggcctcgatatgctgatcctcctgtg
gtttacgaaacgtcaagagaaaagaaagacttgtgtaagcagcaagttcaacactgcgac
agcatttcaaaacaaagcaaggattattttatgtcccgtatgaacaggtatagcaactta
aataattctgcatctaatattgatagttctcaagcagaacaaaggaaggctgagaacaag
gaggagggtggtccttcagtgagcagtaaaagttcaaaaggagagaaagatttgtgtgaa
aaggttcaacattgcggcagcatttcaaagaaaagcaaggaatattttgcgtcttctttg
accaagtttagccacttagcttcaaaatgtgatactgatagttttgaagaagtgcaaagg
aaagcaaagttagcaagaaaaaagagggttttagagtgcttactgaaggagaaagtagta
tcacatgaagcgccaaaaagtaaaacgccttcttttggatcgaggacgagatatacttat
gaacccggggcttactaccaaaggaaatatatgagtcccagtgattacaggtcagagata
cacaggtgcatgaagaacattaactcagagattgctaagagccaatcatgttcagaaccg
caatggaaacatgtcagtgaggcaattccttccatgcgatggaaggatatatgtaaggaa
aaatcagaggataagcaggaaaatgaaaatgaagaacaagaagatcttgattctctatgg
aaagagatggattttgctaataattcatttgactttgctggaggaaatcagggtaataat
gctgattcctgcgagggaaaagaaagtgattgtgataaagcctcgtgtcaacatgagtat
catttagatgaagagattgggcttatatgtctattatgcaaatctgtggtcaccgaaata
agagacatgtcgctaccctttctgcaagacaaaggttggtcgagatgcgaggcgcagtgg
aaggtaaagaacgacatgaagggtccagatatcaacacaacaaagttcgatattttcaga
aatcctgattccgcaagaaacatatcggtacaagaactacgagaacaaaatgagagtgtt
tgggcattgataccagatcttagagataagttaagagctcaccaaaagaaagcttttgag
ttcctgtggaaaaacattgctggttcgatgatcccatcagaaatggaagacgcatgcgac
tcagctggtggttgtgtaatctctcattctccgggagctgggaaaactttactcgtgatt
gcattccttgaaagctctttgagattgttcccagggcagcggccggtgatccttgctcca
aatacgactgtgtacacttggaagaaagaaatgaagaaatggaaggttccgattccagtc
taccaaatccattcatatcaaaattacaggttggaatatcagagtctgactgtggggggg
cgcagagtgaaccaagatgtaatgcatgcagtggattgtctagacaaattgcgcaaatgg
catgaacatccaagtgtcctccttatgagttacccttgtttcctctctttgatgcgagaa
cagtcaaagcatgagtattggagatacatgggtggtgttttacgtgagagtccggggctt
ttaatcctggacgaagggcacaaccctagaagctcacattcaatgttaaggagatttctg
atggaggtgaaaacagaattaagaattttgctttcaggaacattatttcagaacagtttt
gacgagtacttcaatactcttagcttggcaaggccgaggtttattagtgaggtgctaagg
gaattggaccctctctatggagttaaaaatcggaaaggatatcggaggaaggacacaaaa
agatgcaaggagatcctagcaagaaagttctttgtggataagattggtaggagaatccat
tcgaaatacgatgaagatcgaaaaaaaggtctaaataagcttaagcagctaactacgggt
ttcgtagatgtttatgaaggtgatggatctgattgccttccaggtttgcaagcctacgct
ctattgttaaaaccaactccggctcaagacaaggctatgttgaagctcctggagtatgat
tgtggtacgagatattctcttgagtatgagctaacaatcactcttgtatctatccatcct
tggttgttgacaagcttagagtgtctggacaagttcttcaatgatgatgaaaggaaagag
cttgcaggacaacgacatgacattacacgaggttcaaaggtgagatttgtcgtgaacctt
gtgcagaagtgtgtgcacaagagagagaaagtgttaatcttttgccgtaacattgctcca
atgagataccttatggaaatattcaagaatatgttcaattgggcagaaggggaggaaatg
ttaatactgcatggtgatcaattagtattccagcgcacaaggatgattgataaatttgaa
gaccccggtgggaatgctcaagtgttgctagcttcgattggttgttgtggtgaaggcatt
agtttgacagctgcttcacgagttgttttgctggattcagagtggaacccgtccaaaata
aaacaggcagtaggtcgggcgtttagacaaggtcaggagaagatagtttatgtttaccag
cttttgacatcagggactgtggaagaaaagaaacatagcaagacagcatggaaagattgg
gtgtcaaggatgatatttgttgggaataatgcgaaaaattcttctcatgctaaagcagaa
aatattgatgacgaagttttgcgagagatagttgaagaagatgaatccgacttattccat
ctgatcatgaaagatgaaaagctgatggaccgaaagaaaaatgaaactacagcagtgttt
catatgaaaggaactttctga
DBGET
integrated database retrieval system
