Papaver somniferum (opium poppy): 113341067
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Entry
113341067 CDS
T05758
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52B-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
psom
Papaver somniferum (opium poppy)
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113341067
03041 Spliceosome [BR:
psom03041
]
113341067
03036 Chromosome and associated proteins [BR:
psom03036
]
113341067
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113341067
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113341067
mRNA cycle factors
Common to processing body (P body) and stress granule
113341067
Spliceosome [BR:
psom03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
113341067
Chromosome and associated proteins [BR:
psom03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
113341067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
113341067
NCBI-ProteinID:
XP_026441884
LinkDB
All DBs
Position
Unknown
AA seq
645 aa
AA seq
DB search
MSWADVADNTAGGGGGSRPTRPSYVPPHLRGLNPLAQEFPPIQSANDSSGGSSLNPSRSR
EFVRPRGGGSGGGGGRWGAAGGTGGRRNYEPNPFEVADKFAELGVTEVEGGEEGNVGLGG
INFDAYEDIPVETSGTDVPQQVNTFAEIDLGEALNQNIMRCKYVKPTPVQRHAIPIVAAG
RDLMACAQTGSGKTAAFCFPIISGIMKRLQMQQNIPGRGNGRVAYPYALIISPTRELSCQ
IHDEAKKFSYLTGVKVAVAYGGAPMHQQLRNLERGVDILVATPGRLVDLIERARVSLSMI
SYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGERQTMLFSATFPAEIQRLASDFLSNYI
FLTVGRVGSSTELIEQRVEYVLDTDKRSFLMDLLHTQRENGTYGKQALTLVFVETKRGAD
ALEHWLTINGFPATAIHGDKVQMEREQALRSFKTGATPIMVATDVAARGLDIPHVAHVIN
FDLPKDIDDYVHRIGRTGRAGKSGIATAFFNEGNQGISKSLLELLQEGNQAVPTWLNQYA
ERASYGGGGGRGRRQGGGRFGAQDYRRDQPSRGGSNYYGGGGGYGGGGSGYGGGGGYGGG
GGGYGNDAYGGGSGASSGYYAAAPAPSYGGYSYGQQESIVPSGWD
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggctgatgtagctgataacactgctggaggtggtggtggttctagacctact
agaccatcatatgttccacctcatttgagagggcttaacccattagcacaagagtttcca
cctattcaatcagctaatgattcatctggggggtcttccttgaatccgtctaggagtagg
gagtttgttagacctagaggtggtggtagtggaggaggaggaggtagatggggtgctgct
ggtggtactggtgggagaaggaactatgagccaaacccatttgaggttgctgataaattt
gctgaattaggtgttactgaagttgaaggaggagaggagggtaatgttggtcttgggggt
attaattttgatgcttatgaggatattcctgttgaaactagtggaactgatgtgccgcag
caggtgaatacgtttgcggagattgatttaggggaagctttgaatcagaatattatgaga
tgcaaatatgtgaagcctacacctgttcaacgccacgcaattccaattgttgctgctgga
agggatttaatggcttgtgcacaaactggctctggaaaaactgcagcattttgttttcct
attatcagtgggattatgaagaggcttcaaatgcagcagaatattcccggccgtggtaat
ggaagagttgcttatccttatgctcttattatttctcctactagagagttgtcttgccag
atacatgatgaagcgaaaaagttctcttatctgactggtgttaaagttgctgttgcatat
ggtggagcaccgatgcatcagcagctgcgtaatttggaaagaggtgttgacattcttgtt
gccactcctggtcgcttggtggatttgattgaaagagctagagtatctcttagcatgata
agctatctggcgttggatgaggctgacaggatgctggatatgggctttgagcctcagata
aggaagatagttcagcagatggacatgcctccccctggtgagcggcagacgatgctcttc
agtgccacttttccagctgagatacagaggctggcttctgattttctttcgaactatatt
ttcctaaccgttggaagggttgggtctagcactgaactaattgagcagagggttgaatat
gttcttgatacggacaaaagaagcttcttgatggatcttcttcatacccaaagagagaat
ggcacttacggaaagcaagcgttgactttagtttttgtggagacaaagagaggagctgat
gcattggagcattggctgacgataaatggttttcctgcaacagcaatacatggggataaa
gttcaaatggagcgagaacaagctttgagatcgttcaagactggtgcaacgccaattatg
gtagcgacagatgttgctgcacgagggcttgacataccacatgttgcacatgtcatcaat
tttgacctgccaaaagacatagatgattatgttcatcgaatagggcgtactggtcgtgct
ggcaagtcaggcattgcaacagctttcttcaatgaaggcaaccagggcatctccaaatca
cttttagaactcctgcaggaaggaaaccaggcggttcccacttggctcaatcagtatgct
gaaagggcctcctatggtggtggtggtggcaggggtcgtcgacagggcggcggtaggttt
ggtgcccaggattaccgaagagatcaaccttccagaggtggaagtaattactatggtggt
ggaggtggatatggtggaggtggaagtggatacggtggcggaggtggatatggtggtggt
ggtggtggatatggaaatgatgcatatggtggtgggtctggtgctagctctggttattat
gctgctgcacctgcaccttcctatggtggttatagttatgggcagcaggaatctattgtc
ccaagcggttgggattaa
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