Papaver somniferum (opium poppy): 113341787
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Entry
113341787 CDS
T05758
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113341787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113341787
03012 Translation factors [BR:
psom03012
]
113341787
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113341787
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113341787
Translation factors [BR:
psom03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
113341787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_C
R3H
OB_NTP_bind
Ank_2
HA2_N
nSTAND3
AAA_19
Ank_5
ATPase
ResIII
AAA_16
AAA_22
PhoH
TsaE
Myosin_head
ABC_tran
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
113341787
NCBI-ProteinID:
XP_026442316
LinkDB
All DBs
Position
Unknown
AA seq
1213 aa
AA seq
DB search
MSGRRKKFSNYKIPNINEATRIRITQALEDFTHSDDSPVLTFDAGMTNFERAEVHKLCRK
YGLKSKSSGVAETRQVSVYKPTGGKEGMFSKKGKKNISLEFSDESKAYLRDLFSRYPPKE
DELNSVQPMKHNASADNRFRKNDDSLCRPSMDKAKFEEKVKAAFELKNHPKHKQIQEARS
KLPIAVFQESIVSTVESNQVVLISGETGCGKTTQVPQYLLDYMWGKGEQCKILCTQPRRI
SAISVAERISWERGENVGETAGYKIRMETKGGKNSSVMFCTNGILLRVLVERGNGTGAKN
QNWKSRVSEFTHIVVDEIHERDHHSDFILTILRDLLPSCPHLRLILMSATLDAERFSQYF
GGCPVVSVPGFTYPVRTFYLEDVLSIIKPVEGNHLDPGSTAGGMRDSEVREDHKAALDEA
IDLAWSSDEFDPLLELLLSTEATPRLYNYQHTLTGASPLMVFAGKGRTSDVCTLLSFGVD
CNLRAKDGTTALEWAERANQGEVAEIIKQHMSNVLAKSAGEQELLEKYYSNINPDFVDIV
LVQRLLKKICSDSEEGAILVFVPGWDDINKIRADLLSSPFFKDSSKFIILSLHSMIPSSE
QKKVFQHPPKGSRKIILSTNIAETAITIDDVVYVIDSGRMKEKNYDPYNNVSTLQSSWVS
KASARQREGRAGRCRPGICYHLYSRTRASSLIEFQVPEIKRMPIEELCLKVKMIDPNCSI
SDFLQKTLDPPVYESVRNAIVALQQIGALTADDNLTDLGQKLGSLPVHPTTSRMLFFAIL
MSCLDPALTLACATEYRDPFVLPIDPFEKQKALEAKAKFSSLYGGVSDHLMTVAAYECWE
HARNKGQERQFCSQYYISSNTMNMLSNLRKQLIKELMQNGFISEDISIYSQNAREPGVLH
AVLVAAMYPMVGKLIRQTRGGTKTRAVTASGNNFSLLTHPYNIKSLNKQKSQILLVYDDI
TRGDRGMYVRDCTVVGPYPLLLLGTEMVVAPSTADSYEDDEDSSEEEENSDASGSDEETN
VTVAQKRAERIMASPENAVSVVIDRWLTFESTAIDVAQIYCLRERLKAAILFKVKYPQKD
LPADLKSSVDAIASILSHDGLSGIPESLRGPIKSSNPEEGQPDDSSSSSDNYLKFLWNYS
ADSHNQSQLFQGGDSGGRGRQGFFANSRGRGRRGGSFANGRGRGRQGFIANNKFALKRHG
GGGGDGVTNQEKR
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgtctgggcggaggaagaagtttagtaattataaaatccctaatatcaatgaagccaca
cgtattcgtattactcaagctcttgaagatttcacccactctgatgattccccagtactt
acattcgatgccggtatgacgaatttcgaaagggcggaagttcataaattatgtaggaaa
tatgggttaaaatctaaaagttcaggggttgcggaaactcggcaagtatcggtgtataaa
ccgacgggtgggaaggagggaatgtttagcaagaagggaaagaaaaacattagcttggaa
ttttcggatgagtcgaaagcttatttaagggatttattttcaagatatcctcctaaagag
gatgaattgaactctgttcaacctatgaagcataatgcaagtgctgataatagatttagg
aagaatgacgattctttgtgtagaccgtctatggataaagctaaatttgaagagaaggtg
aaagcagcttttgaattgaaaaaccatccgaaacataagcagatacaggaagcgaggtct
aaacttccaattgcggttttccaggagagcattgtgtctactgtagagtctaaccaggtt
gtgctcatatccggtgagacagggtgcggaaaaaccacacaggtcccacaatatttattg
gactacatgtggggtaagggcgagcagtgtaaaattctgtgtactcaacctcgacgtata
tcagccatatcagttgctgagagaatctcttgggaaagaggggaaaatgtaggggagact
gctggttacaagatacggatggagactaaaggagggaagaattcatctgttatgttttgc
acaaacggcattcttttgagggtgctggttgagagaggtaatggtacgggagctaagaat
caaaactggaagagtagggtttccgaatttactcacattgttgtggatgaaatacatgaa
agggatcaccattctgattttattctgacgattctaagagacttgctcccttcttgtcct
cacttgcgcctgatacttatgagtgcaactctcgatgctgaacggttttcacaatacttc
gggggctgcccagttgtcagtgtacctggttttacatatccggtcagaactttctatttg
gaggacgttctttctataataaaaccagtagaggggaatcatcttgatccaggttcaact
gctggaggcatgcgagattctgaggtacgagaggatcataaagctgcacttgatgaagca
attgacttggcatggtctagtgatgagtttgatcctctcctagaactactgctttctact
gaggctactccgagattgtataattatcaacacactttgactggagcctcaccattaatg
gtttttgctgggaaaggtagaactagtgatgtttgcacgctcctctcatttggtgtggat
tgcaatctacgcgccaaagatggaactacagctttggaatgggccgagagggcaaaccag
ggggaagttgctgaaataatcaagcaacatatgagtaatgtccttgcaaaatcagcagga
gaacaggagttgcttgagaagtattattccaatatcaatccagattttgtcgacattgtt
cttgtgcagcgtttgttaaagaaaatttgttctgattctgaagaaggtgctatccttgta
tttgttccaggatgggatgatatcaataaaattcgagccgacttactttcttctccattt
ttcaaggatagttccaaatttataatattatcgcttcactctatgattccatcttctgaa
cagaagaaggttttccagcatccacctaaaggttcacgcaagattattctctcgaccaac
attgctgagactgctattacgattgacgatgtagtttatgttatagacagtggcaggatg
aaagagaaaaattatgatccttacaataatgtctctacactccagtcctcgtgggtttcg
aaggctagtgccaggcagcgggaggggcgtgcagggcgttgtcgtccaggaatttgttac
catctctactcgaggactcgagcctcatctttgatagagttccaagttccagaaatcaaa
aggatgccaattgaggaactctgtttgaaggtgaagatgattgatccaaattgcagtata
tcagactttttacaaaagactttggaccctccagtttatgagagcgtacgcaatgcaatt
gtggctcttcaacaaataggagccttgacagctgatgacaatcttaccgaccttgggcaa
aaactcggctctctgccagtgcatccaacaacgagcaggatgctcttttttgccatattg
atgagctgccttgatccagctctgactctagcatgtgcgaccgagtacagggatccattt
gttctgccaatagacccttttgaaaagcaaaaagccttggaagctaaagcaaagttttca
tctttatatggtggggtaagtgatcacctgatgaccgttgcagcatatgagtgttgggaa
catgcaagaaacaagggtcaagaacgtcagttctgttctcagtattatatctcctcaaac
accatgaatatgctgtctaacttgcgtaagcagcttatcaaggagctgatgcagaatggg
tttatttcagaggatatatctatatatagccagaatgcgcgtgagcctggtgtacttcat
gcagttcttgtggcagcaatgtatcctatggttggaaaattaatccgacaaactagaggt
ggaaccaaaactagggcggtgactgcaagtggtaataacttttcattgctcactcatcct
tataatatcaaatcactcaacaagcagaagtctcaaatattgctcgtatatgatgatatt
acccgtggtgatcgaggtatgtatgtaagggactgtactgttgtgggtccatacccattg
ttgttacttggaacagagatggttgttgcaccgtcaacagctgatagttatgaggatgat
gaggatagtagtgaagaagaagagaacagtgatgcgtcaggaagtgatgaggagacgaac
gttacagttgcacaaaaacgtgctgagcggatcatggcctcccctgaaaatgcagtttct
gttgttattgaccgttggcttacttttgagtccacagctattgatgttgctcagatttac
tgcttgagggagcgactgaaggcagcaatcctttttaaagtgaaatacccacaaaaagat
cttcctgcagatctcaagtcttctgttgatgcaatagcttctatcctttctcatgacggc
ttatcagggattcctgaatccttgagaggtcccataaagtcatctaatccagaggaaggt
caaccagacgatagcagcagttcctcagacaattatctgaaatttctgtggaactatagt
gctgattcccacaatcaaagccagttatttcaaggtggtgatagtggtggacgaggtaga
cagggtttcttcgcaaatagtcgtggacgaggtagaaggggtggttcctttgctaatggt
cgtggacgcggtagacagggtttcattgctaataacaaatttgctcttaaacgacatggt
ggtggtggtggtgatggtgtgactaatcaagaaaaacgataa
DBGET
integrated database retrieval system
