Papaver somniferum (opium poppy): 113343122
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Entry
113343122 CDS
T05758
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113343122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psom03041
]
113343122
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113343122
Spliceosome [BR:
psom03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113343122
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
AAA_22
DEAD
PWI
AAA_19
AAA_30
T2SSE
nSTAND3
PhoH
nSTAND_NTPase5
TsaE
SRP54
ABC_tran
Motif
Other DBs
NCBI-GeneID:
113343122
NCBI-ProteinID:
XP_026443205
LinkDB
All DBs
Position
Unknown
AA seq
1046 aa
AA seq
DB search
MAGDGDLKIWVSDKLMSIVNFSQATVIQYVIGLAKQASSPSDLNTKLVEFANLPSTTETR
KFAQELFARAPRKSSGLNSYQRDEKEAAMSVRKQQTYALLEPDSDEDVIAAVQKIPSPKK
VDSHEKSFRKKIENQDYDDEDEVMAEPVNEKRAKRKASYDEDNLETEEARLRDQEERKQL
EKNLRERDAAGTRKLTEQKLSRREEEEAIRRSKAMEKDDTEALRVVSRQEYLKKREQKKL
EEIRDDIEDEQYLFAGVKLAEAELREQRYKKEIYDAVKKRSEETEDVNEYRMPDAYDDLD
RGVNQEKRFATMVQRYRDGAGDKMNPFAEQEAWEDHQIGKATLQYGSKNKKMSDDYQYVF
EDQIDFIKASVLDGEKYEDELTSDQPDSSSDKSELQKLKEIRKTLPIYNYRERLLKAIEE
HQVLVIVGETGSGKTTQIPQYLHEAGFTKRGKVGCTQPRRVAAMSVSARVAQEMGVKLGH
EVGYSIRFEDCTSDKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGL
VKDISRFRSDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRFPVDIHYTKAPEPDYLDAA
VVTVLQIHVTQPPGDILVFLTGQEEIETAEEVLKHRTRGLGSKIAELIICPIYANLPTEL
QSKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFVKMKSYNPRTGMESLLINPIS
KASANQRAGRSGRTGPGKCYRLYTAYNYLHDLEDNTVPEIQRTNLSNVVLTLKSLGIHDL
LNFDFMDPPPTEALLKALESLFALNALNSVGELTKVGRRMAEFPLDPMLSKMIVASEKYK
CSEEVISIAAMLSIGNSIFYRPKDKQVHADNARLNFHTGNVGDHIALLKVYSSWKETNFS
TQWCYENYIQVKSMKRARDIRDQLEGLLERVEIELTSESNDLEPVKKAITSGFFHHTAKL
QKNGAYRTVKNPQTVHIHPSSGLAQLLPRWVIYHELVMTTKEYMRQVTELKPEWLVEIAP
HYYQLKDVEDVGTKKMPRGEGRAEKD
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagatggagatctcaaaatttgggtttcagacaagttgatgtcaattgtaaat
ttctctcaggccactgttattcaatacgttattggattagctaaacaagcatcttcgccg
agtgatcttaataccaagcttgtagagtttgcaaatttgccttcaacaactgagacaaga
aaatttgctcaagagctttttgccagagccccacgtaaatcctctgggttaaatagttat
caaagagatgagaaagaggctgctatgtcagttaggaaacaacagacttacgctctttta
gaaccagactctgatgaggacgttattgcggctgttcagaagataccctctcctaagaaa
gtggattcgcatgaaaagagtttcaggaagaagattgaaaatcaagattatgacgacgaa
gatgaggtgatggccgaaccagttaatgaaaaacgagctaaaagaaaggcatcatatgac
gaggataatttagagacagaggaagcaagactacgagatcaggaagagcgtaaacaactg
gagaaaaatttgagagaaagagatgcagctgggactagaaagttgacggagcaaaaatta
tcgcgtagagaagaagaggaggcaattcgaagatccaaagccatggagaaagatgacact
gaagctttaagagtggtttcaagacaagagtatttaaagaaaagggagcaaaagaaattg
gaggagatcagggatgatatagaagatgaacagtatctcttcgctggtgtgaagctcgca
gaagcagaattgcgcgaacaaaggtacaagaaagaaatctatgacgctgtaaaaaagcgg
tcagaagagacggaggatgttaatgagtacaggatgcctgacgcttatgatgacctcgat
cgtggcgtaaatcaggagaagcgatttgctactatggtgcagcgatacagggatggtgct
ggagataagatgaacccatttgcagaacaggaggcatgggaagatcatcaaatcgggaag
gcaactctacagtatggttcgaaaaataaaaaaatgtcagatgattatcagtatgtgttc
gaggaccagattgatttcatcaaggcttctgtcctggatggtgaaaagtatgaagatgaa
ctgacaagtgatcagcctgacagttctagtgacaaatcagagttacagaaactcaaggaa
attagaaagacacttccaatctacaattaccgagagcgcctactaaaggctatcgaggag
caccaggttcttgtcattgtcggggagactggttctgggaagactacgcagattccccaa
tatcttcatgaagctggtttcacaaaacggggaaaggttggatgcacccagccacgtcgt
gtggctgctatgagcgtctctgcccgagttgcgcaggaaatgggcgttaaacttggccac
gaggtcggttattccatacgttttgaagattgcacctcagataaaacagtcttgaagtat
atgacagatggcatgttgctacgagaatttcttggtgaacctgacttggcaagctacagt
gttgtgatggtggatgaggcacatgaaagaacgctgtcaacagatattttattcgggctg
gttaaggacatttctcggttccggagcgacttaaagttgcttatttctagtgcaactctg
gatgcggagaagtttagtgattatttcgactctgctccaatattcaaaatacccggaaga
cgatttcctgttgatattcactatactaaagcaccagaacctgattacttggatgctgca
gttgttaccgttcttcaaattcatgttactcaacctcctggtgatattctggtgtttcta
acgggacaggaggaaattgaaactgcagaagaggttctaaaacatagaacacgaggactt
ggatcgaagatagctgaactgatcatatgcccaatttatgcgaaccttccaactgagctg
caatctaaaatatttgagccaactcctgaaggggcaagaaaggttgtattggcgaccaat
atcgcagaaacatctctgacaattgatgggataaaatacgtgattgatcctgggtttgtc
aagatgaagtcctataatccaaggactgggatggagtctttactaatcaatcccatatca
aaagcgtctgcaaatcaaagggcaggccgatctggacgaacaggccctggaaagtgctac
cgcttatatacagcatataactatcttcacgatttggaagataacactgttccggagata
cagaggactaatctatcaaacgttgttcttactctcaagagtctcggcattcatgacttg
ttgaattttgacttcatggacccaccaccgacggaagcattactgaaagctttggagtct
ttgtttgccctcaatgcactgaatagtgtaggagagctgactaaagtgggaagaaggatg
gcggagtttcctcttgatcccatgttatctaaaatgatagtcgcttcagagaagtataaa
tgttctgaagaggttatttctatcgcggcgatgctctctattggaaattcaatattttac
cgtcccaaggacaaacaagtgcatgcagataatgctaggttgaattttcacactgggaat
gttggggaccatatagcgttacttaaggtttacagttcgtggaaggagacaaacttttca
acgcagtggtgctatgagaattatattcaggtgaagagtatgaagcgcgcccgagatatt
agggaccaactggagggattattggagagggttgaaatcgaactaacatctgaatccaat
gatttggaacccgtaaagaaggctataacttcaggttttttccaccatactgcgaagctg
caaaagaatggagcttatcgaactgtgaagaatcctcaaacagttcatatacatccaagt
tctggtctggcacagctgctcccaagatgggtgatttaccatgaattggtcatgacgacc
aaagaatatatgagacaggtcacagaattgaaaccagaatggttggtcgagatcgcacca
cattactatcagcttaaggatgttgaagatgttggaacaaagaaaatgcctcgtggagag
ggacgtgcagagaaagactaa
DBGET
integrated database retrieval system
