Papaver somniferum (opium poppy): 113346926
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Entry
113346926 CDS
T05758
Name
(RefSeq) protein CHROMATIN REMODELING 8-like isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
113346926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
psom03036
]
113346926
03400 DNA repair and recombination proteins [BR:
psom03400
]
113346926
Chromosome and associated proteins [BR:
psom03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
113346926
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
113346926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
ResIII
Motif
Other DBs
NCBI-GeneID:
113346926
NCBI-ProteinID:
XP_026446263
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Position
2:12433734..12440706
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AA seq
1237 aa
AA seq
DB search
MEEEDEDRFLLNTLGVTSANPEDIERTILDEAKNDSGERDEAGGSIVEHLVDDQKGNDTS
SASRAKIYNKLRAVEVEIDAVEATVEQSKSVASEEDNVLDGVVDKGKKVYIEEDIHVSED
GPSGLTLQHALATDRLQSLKRTKARLRKELSEFDKLNNEGVTDHEQLIKSLVKEDVHAKG
PKRKLKGSQKSSKGTNKRHKTVSFDEDVDFDAVLDAASAGFVETERDELVRKGVLTPFHK
LKGFERRVQHPGPSSRLSTAEEEEAKNESIASETVSKVVRSISEAAKARPTTKLLDAKEL
PKLEAPTHPFSRLNAPLKQKSTENGQEGKKDKRRKNKRPLPGRKWRKAISREEILAEGSD
EAKDNSITSEENQDSEELTNTEDSHVTLEGGLRIPEVIFDKLFDYQKVGVQWLWELHCQR
AGGIIGDEMGLGKTIQVISFLAALHFSEMYKPSIVICPVTLLRQWRREAKKWYPSFHVEI
LHDSAQDPVSKKKKSDESDYDSEGSFDSDNERKLSKKSTSRNKWDSLIARILRSENGLLI
TTYEQLRLLGEKLLDIQWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKL
SELWSLFDFVFPGKLGVLPVFEAEFAVPISVGGYANATPLQVSTAYRCAVVLRDLIMPYL
LRRMKADVNAHLTKKTEHVLFCSLTPEQRSIYRAFLASSEVEQIFEGNRNSLYGIDVMRK
ICNHPDLLEREHSSSNPDYGNLQRSGKMKVVEQVLKVWKDQGHRVLLFTQTQQMLDILES
FLIAADYSYRRMDGQTVVRQRMALIDEFNDSKDIFIFILTTKVGGLGTNLTGANRVIIFD
PDWNPSTDMQARERAWRIGQTRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQR
RFFKARDMKDLFVLQDEGEGASTETSNIFSQLSEDINAIQPLKDNSAKDKTVVPLLTSSS
DAEVSGSNNSLALDAKGKEKAFQNDGEVDAETNVLSLLFDAQGIHSAVNHDMIMNAHEEE
KVRLEEQASQVAQRAAEALRQSRMLRSRDSVSVPTWTGRSGAAGGPSSVRKKFGTTVNSQ
LVSNSKASADVSLNTGISRSNGFSAGVSTGKALSSMELLARIRGTQERAVVDGLEQQFDL
VSSGSIKRSEATASSGASSSRAFHKISSVQPEVLIRQICSFIQQKGGSTSSAAIVQYFKD
RIPPKDLPLFKNLLKEIATLEKDENGSSWILKPEYQQ
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagaagacgaggatagatttctgctaaatactttgggtgtaacatctgctaat
cctgaggatattgaacgcactatacttgatgaggctaaaaatgatagtggagaaagggat
gaagctggagggagcattgtggagcatcttgttgatgatcaaaaaggcaatgatacatca
tctgctagtagagcaaaaatttataataaattgagggcagtggaagttgaaatagatgct
gttgaggctactgttgaacagtcaaagagtgttgctagtgaggaagacaatgtcttggat
ggtgttgttgataaaggaaagaaggtatacatagaggaggatatacatgtcagtgaagat
ggccccagtggtttaacccttcaacatgcgttagctactgatcgactacaaagccttaag
agaacaaaggctaggctgaggaaagaactttctgagttcgataaacttaacaatgaagga
gttactgatcatgaacagttgattaaatctcttgtcaaggaagatgtacacgccaaaggg
cccaaacgaaagctgaaaggcagtcaaaagtcaagcaaaggcacaaacaaacggcataaa
acagtttccttcgatgaagatgttgattttgatgcagtgctggatgcggcatccgcagga
tttgttgaaactgaaagggatgaattggtcaggaaaggagtcttaactccttttcataaa
cttaagggttttgagcgccgagttcaacacccaggtccatcatctaggttaagtaccgct
gaagaagaagaagcgaaaaacgagagtattgcttcagaaaccgtctctaaggtggttaga
tcaatctctgaggctgcaaaagctcgcccaacaaccaagcttcttgatgcaaaagaatta
cccaaactcgaggcacccactcatccatttagcagactgaatgcgcctctgaaacaaaag
tccaccgaaaatgggcaagaggggaagaaagataagagaaggaagaacaagagaccattg
ccagggaggaaatggagaaaagccatttctcgcgaggagatacttgcagaaggaagtgat
gaagcaaaagataactcgatcacctccgaagaaaatcaagattctgaagaattaaccaat
acggaggattcacatgtgacactcgaaggaggattaagaatcccagaggtgatttttgac
aaactctttgactatcagaaagttggagtgcagtggctttgggaactgcactgccagaga
gcaggtggaattattggggatgaaatgggtcttggtaagactatccaggtcatatctttt
cttgctgctttgcatttcagtgaaatgtataaaccaagtattgttatttgtcctgtaact
ctcttgcgtcagtggagacgagaagcaaaaaagtggtaccctagctttcatgttgagatt
cttcatgattctgctcaggatcctgttagtaaaaagaaaaagtctgatgaaagcgattat
gacagtgaaggatcattcgacagtgataatgaaagaaaactttccaaaaaaagcacctca
agaaacaagtgggattctttgatagctcgtattttaagatcagaaaatgggttgctcata
accacctatgaacaactccgattactcggtgaaaaacttcttgatatccagtggggttat
gcggttctggatgaaggacatcggatccgaaaccccaatgcagaggttactttagtttgt
aagcaattgcaaactgtgcatcggataataatgacgggagcacccattcagaacaagctg
tctgagttgtggtctttattcgactttgtttttcccggaaagcttggagttctacctgtt
tttgaggcagaatttgcggtccccatttctgttggtggttatgcaaatgcaactccattg
caagtatctacagcttacagatgtgcagttgttctgcgtgacctcattatgccttacctt
cttcggcgaatgaaggctgatgtgaacgctcatcttacaaagaagacggagcatgttctg
ttttgcagcctgactcctgagcaacgatctatataccgagcatttcttgctagttctgag
gtggagcagatttttgaaggaaataggaactcgctctacgggattgatgtcatgcgtaaa
atttgcaaccaccctgatttgctagagagagaacattcctctagcaatccagattatgga
aacctacagcgcagtgggaaaatgaaagttgttgaacaggtacttaaggtgtggaaggat
cagggtcatcgtgttcttttgtttacgcagacccaacaaatgcttgacattcttgagagt
ttcctgatagctgctgattatagctatcgacggatggatgggcagactgttgtaagacag
cggatggctttaatcgacgaattcaatgattcaaaggacatatttatcttcatcctaact
actaaagttgggggcttgggaacaaatcttactggtgcgaatagggtgatcatctttgat
cctgattggaacccttctacagacatgcaggcaagagaacgtgcttggcgtattggacag
actcgagatgttacagtatacagattgattactcgtggaacaatagaggaaaaggtttat
catagacagatttataaacatttcctgacaaataagatcttgaagaacccgcagcagcga
aggttcttcaaggctagagatatgaaggatctcttcgttttgcaagacgagggggaaggc
gcttcaaccgaaacatctaatatctttagtcaactgtccgaagatataaacgccatccaa
ccgcttaaagataattcagctaaagacaaaactgttgtcccactattaacatcttccagt
gatgccgaagttagtggttcgaacaactctttagctcttgatgctaaaggaaaggaaaaa
gcttttcagaatgatggtgaagtagatgcagaaactaatgttttgagtcttctttttgat
gcccaagggatacatagtgcggtgaaccatgatatgattatgaatgcccatgaggaggag
aaagtgaggctggaggagcaagcttcacaagttgcacaacgtgctgctgaagcattacgc
caatcacgcatgctccggagcagagatagtgtatctgttcccacatggactggcaggtct
ggtgctgctggtggtccatcctctgtccgcaagaagttcggcacaaccgtaaactctcaa
ttagttagtaactcaaaagcttcagcagatgtttctttgaacaccgggattagcagatca
aatggtttttcagctggagtgtctacaggaaaagctttatcttcgatggagttactagct
agaatacggggaacacaagaaagagcggttgttgatggacttgaacagcagtttgatttg
gtttcctctggttctattaaaagatcagaagcaacagcaagctcaggagcttctagttct
agggcatttcataagatatccagtgtccagcccgaggttttgattcgtcaaatttgtagt
ttcatacagcaaaaaggtggaagtaccagttcagccgctattgtgcagtattttaaggat
aggataccaccgaaagatctgccgctttttaaaaacctattgaaggaaatcgcaacctta
gagaaagacgagaatggatcctcgtggattcttaagccagagtaccaacaatga
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