Papaver somniferum (opium poppy): 113347424
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Entry
113347424 CDS
T05758
Name
(RefSeq) uncharacterized protein LOC113347424
KO
K19026
spatacsin
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
113347424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psom03400
]
113347424
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
113347424
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
113347424
NCBI-ProteinID:
XP_026446858
LinkDB
All DBs
Position
2:39881350..39899471
Genome browser
AA seq
3241 aa
AA seq
DB search
MAFSCVNGAVDGPAVLQVSKWSPYETQLNLSEFSGAFISPTRELLLLLSYQCEALLIPLI
TGESRDTDDLGRCYPETHHESSDENLQSSGLVDSIQSDSLDDIPSTSGAVEDDYDGGKNT
FSRSKCYPVLSGVKSLAWGHCGDGYNQHKRAAFKELLFVSDDHGITVHAFRYLGKTHEET
KQSPECVDGNGRWEKWGHSATSVDKSCYTQATEDSGSCRVNGNVGSEQRSNDSPGVFISN
DSSIENSTSKIWFCNEVETIESGSKMSTKFPASPSFPCSAEVVSFSISSSISVFLGFLSR
SGTASDMKQQQGDGTLLQGLAADSGNSNSSFINQDVNYDEFKCLRIFSSTSSRLIGFVMA
LEGPVLGSASEENEVRFSKVLVVVTTIHQWGIQWVTTLNLHDTSLSQGLVSEWTDFQFSD
KGVVCLNASGLIFIYCATTGKLVECLDVLQVCGINSKQKLLRERKATAGGGDVRHRNADR
KNDLDDKINGNAGYRSEDHSRSKRNFKKLMVSLSSSLLAVGDEYGVIYLIYPGDYASKKS
YSANKLLPHYGHSGLDVFVRWEIGGSDIGHHKSLHNVSLSNDRFNKEDGKSLENQKCHLQ
HNGGNYSYYSSGFSAASQNKDQGISSSIVSSNPVRRIFLPRSGRSKDDTICFSPLGITRL
SKTWDVNGGKGFYIIHTHMQVDSTIHEDNVLASPFPRRGPLDTEGVFVGEALGCCFQGCL
YLVTENGLFVVLPSVSVATTGNPVESVCYWRPSTFNCTGDQSEKDFGTKKLKELWPPWKV
EVLDRVLLYEGPEEADLLCLKNGWDLKVARLRRLQLALDYLKADEIQQSLEMLVDVNMAE
EGILRLLFSAIYQIFCRAGNDNEVALASRLLSLAASFATKMVRKYGLLQHKKEKFQVQIV
LNEAQSQINNSRRLHEMAHFLEVIRSLQCKLGARYRIPGQGLVDRNSLLDDSHPQSSSLV
IVPSELRNPLEQALPASELAFEDTEKLALAPVEPFSIPPTSDSDTSNALSVVATKDEIQG
RLLIPLENPKDMIARWKIDNMDLKAIVKDALHSGRLPLAVLQLHLQNFKDLVTEKEPQDT
FNEVRDVARAIAYELLLKGETSLAVATLQRLGEDIEVSLKQLLFGTVRRSLRMQIAEELK
RYGYLGPHEWKMLERIALIERLYPSSSFWRTFHGRQKEPGDAPSSLTLLENKLHMMCLLS
VNDCKIECGEIDGVVIGPWASISESCVFPVVDEDTTHAGYWAGAALWSDAWDQRAIDRIV
LDRPLLMGVHVLWESQLEYHMCHDDWEEVYKLLDMIPSTVLSNGNLQINLDGLDSAETEG
FNMVSSHYDKYICSPEELDVVCMTVPNVKILKFPANYMCSAWLKGLFEQELAKRSIFLKE
YWDGTEEIIPILARAGFITKISKTFVLDESIEDVPDINFSNVGGEFDRHAAQALHKLVIR
HCAQHDLSNLLDLYLDHHKLVLDNDSLISLQDAAGDCEWAKWLLLSRVKGREYDTSLCNA
RAIISKNVVLGSKISVLDMEEVIRTVDDMAEGGGEMAALATLMYAPSPIHKCLFSGSVKR
RFSSSAQCTLENLRPALQRFPTLWRTLIAACFGHDANGISLVPDAKSVFGNSALSDYLNW
RESIFSSAGHDTSLLQMLPCWFSKGIRRLIQLFVQGPFGWQSLAGVPTGESFLHRDISYF
INAHENGEVSAMSWEVAIQKSVEKELFASSLEETTFGVEHYLHRGRALGAFNHLLGLRVQ
MLNENSHKKQSGASSGQANIQSDVQMLLAPVTQNEESLLSTVMPLAISHFEDSVLVASCA
FLLELCGLSASMLRIDVAALRRISSFYKSSEYNEHFQHFSPKGSAFHAAPREGDITVSLA
QALADDYMHCDSSGTADQGEISNIGVTASKRSSRGVLAVLQHLEKASVPLMAEGEICGSW
LLSGSGDGAEFRSQQKAASQHWSLVTAFCQMHQIPLSTKYLSVLAKDNDWVGFLTEAQVV
GHPFDATIQVASKDFSDPRLKIHILTVLRSMYSTRKKPVSSPNTAPRGKTNEISMSSENN
GMVPVELFGLLAECEKQKSPGEALLLRAKDMRWSLLAMIASCFSDVSPLSCLTVWLEITA
ARETSSIKVNDIASQIANNVGAAVEATNLSPGGNKDLTFHYNRKNAKRRCLIESLSAVAA
SNDSGNPGVVKKSVSTELSPEDEDKRELDDEDIKVLSDPDEGLTSLSKMVSVLCEQRLFL
PLLRAFETFLPSCSLLPFIRALQTFSQMRLSEASAHLASFSARIKEEPFHARANIGREGQ
VGAPWISSTAVTAADAMLSTCPSAYEKRCLLQLLSATDFGDGGSASTYFRQLHWKINLAE
PALRKEDDLYLGNETLDDASLLTALENNGHWEQARNWARQLEASGGPWKSAAHHVTETQA
EAMVAEWKEFLWDVPEERAALWGHCQTLFLRYSFPALQAGLFFLKHAEAVEKDIPAKELH
EMLLLALQWLSGTMTQCSPAYPLHLLREIETRVCLLAVESEAQAKCEGDFSTPISGQNFT
SGNSSSIIERTASIVTKMDNHLSSMKIRATERHDMRESNQIHVRHPQATDPTSPPAALGG
MKTKRRPKSYLPSRRSHVESIEKNNDLDDSINSPSNSRSSAEQSKGLPLQEDDVGVEASV
SRWEERVGPEELERAVLSLLEFGQVAAAKQLQHKLSPLHVPAEFLVVDAAIKVATVSTPS
CSEVSVSRLDAEVLSLVKSYNILEDNSIFDPLQVLESLATKCAKDGGSGLCRRIIAVVKA
ANVLEISFTEAFRIRPLELLQLLSLKAQDSLEEAKLLVQTHTMPPASIAQILAESFLKGL
LAAHRGGYMDSQKDEGPAPLLWRLSDFLKWAELCPLEPEVGHALMRLVITGQEIPHACEV
ELLILSHHFYKSSACLDGVDVLVALAATRVESYVSEGDFSCLARLVTGVSNFHALNFILG
ILIENGQLELLLQKYSAAETTTGTAESVRGFRLAVLTSLKLFNPNDLDAFAMVYNHFNMK
HETASLLEQQAMHCIRLWFQRYDKEQTEDLLESMRYFIEAAQVHSSIDAGNKTRNACSQA
SLISLQIRMPDFYWLNLSETNARRALVEQSRFQEALIVAEAYGLNQPGEWALVLWNQMLK
PDLTEQFVSEFVAVLPLQPSMLVELARFYRAEVAARGDQSHFSVWLSPGGLPAEWLKHLG
RSFRCLLRRTRDLRLRVQLATAATGFSDVLESCSKALDKVPETAGPLVLRKGHGGTYLPL
M
NT seq
9726 nt
NT seq
+upstream
nt +downstream
nt
atggcgttctcttgtgtcaatggagctgtggatggccctgcagtattgcaggtgtccaag
tggagtccatacgaaactcaactgaacctttcagaattttctggagcttttatatctcca
actagggagctgctgttattactttcatatcaatgtgaagctttattgattcctttgatc
actggggagtctagggatacagatgacctgggtaggtgttatccggaaactcaccacgag
tcaagtgatgagaatttacagtcttcaggtttggtggattctattcagtcagattcgttg
gatgatatcccaagtacttctggagctgtagaagatgattatgatggtggaaaaaacaca
ttttcaagatctaagtgttatcctgttctttctggtgtcaaatcactggcttgggggcac
tgcggggatggctacaatcagcacaaaagagctgcttttaaagaacttctatttgtgtct
gatgatcatggcatcactgttcatgcttttcgttaccttggtaaaacccatgaagaaaca
aaacaatcgccagagtgcgtggatggaaatgggaggtgggagaaatggggccattctgcc
acttcagttgataaaagttgttatactcaggcaaccgaggatagtggctcgtgtcgagta
aatgggaatgttggatccgaacaaagatcaaatgattcccctggtgtattcattagcaat
gactcctctatagaaaattctacatcaaagatatggttttgtaacgaagttgaaactatt
gaatctgggagcaaaatgtcgacaaagttccctgcaagtccatcgtttccttgttcagca
gaagttgtttcatttagcatttctagtagcatttcggtatttttgggcttcctctctcgt
tccggtactgcttcagatatgaagcaacaacagggtgatggaacactactgcaaggttta
gctgctgattcgggtaactcaaattcaagttttataaaccaagatgtcaactacgatgaa
ttcaaatgcttaaggatattctcgagcacgtcaagtcgcttaattggttttgtcatggcg
ctagaaggtcctgtcttgggcagcgctagtgaagaaaacgaagtgagatttagcaaggtc
ttagttgtggttactacaattcaccagtggggaatacaatgggttaccacactgaacctt
catgatacgtcactgagtcagggtctagtatctgagtggactgattttcagttttctgat
aaaggcgttgtttgtctcaatgcgtctggtctaatcttcatttattgtgcaacgacaggc
aaacttgtagaatgtcttgatgttttgcaagtttgtggaatcaactcaaaacaaaagctg
ctgagggaaagaaaagcgaccgctgggggtggagatgtgaggcatagaaatgctgatagg
aaaaacgacctagatgataaaattaatggtaatgcaggttaccgaagtgaagatcattcc
cgctctaagagaaattttaaaaaattgatggtttctttgagttcttcacttttggcggtt
ggtgatgaatatggtgttatctatctaatctatccaggcgattatgcatcaaaaaaaagt
tattctgctaacaagttgctcccacactatgggcactctgggctcgatgtctttgttcgt
tgggagattggaggttctgacataggccatcataagagtttacataacgtatccttgagc
aacgatagattcaacaaagaagatggaaagtctttggaaaaccaaaagtgtcacctccaa
cataatgggggcaattatagttactattcgagtggtttttctgctgcttcacaaaataaa
gatcagggaatttcgagttctatagtatcatcaaacccagtacgcaggatatttctacct
agaagtggacgtagtaaagatgataccatttgtttttctccccttggaatcacacgactc
agcaagacttgggatgtaaatggcggaaagggcttttacattattcatacacatatgcag
gtagattcaacaatccacgaggacaatgtgttggcttctcctttcccaaggcgtggccct
ctggatacagaaggagtgtttgttggtgaagctcttggatgctgtttccaaggttgtttg
tatttggtaacagaaaatggtctctttgttgttcttccctcagtttcagtcgcaacaact
ggtaatccagtagaatcggtttgttattggcggcccagtacctttaattgcactggggat
cagagtgaaaaagattttgggaccaagaaactcaaagaactctggccaccttggaaagta
gaagttctggatagagttcttctgtatgaaggccctgaagaggcagatctcttatgtttg
aaaaacgggtgggacttgaaagttgctcggttgcgtcgattgcagttggctttggactac
ttgaaagctgatgaaatacaacaatctctggaaatgcttgtcgatgttaatatggctgaa
gaaggcatccttagattgctcttttctgccatttatcagatattctgtagagctgggaat
gataatgaggttgctcttgcgtcaagacttctgtctttagcagcaagctttgcaaccaaa
atggtgcggaaatacgggctactccagcataagaaagagaaatttcaggtccagattgtt
ttaaatgaagcacaaagtcaaataaacaattcgaggaggctccacgagatggctcacttt
ctagaggttatcaggagtctgcagtgtaaacttggtgcacgttacagaataccgggtcaa
ggattggtggatagaaattcattgctggatgactctcatcctcaaagttctagtcttgtt
attgtaccttcggagctacgaaacccactggaacaggccttacctgcatctgagttggca
tttgaggacactgaaaaactcgctttggctcctgttgaacccttctcgattccgcctact
tctgactcggacacgtccaatgcattatctgttgttgcaacgaaagacgagattcagggg
agactattgattcccttggaaaatccgaaggatatgattgcacgctggaagatagataat
atggatctgaaggccattgtcaaggatgctttgcactcaggtcgtctccctttagcagtg
cttcaactacatctgcaaaatttcaaagatttagttactgagaaagaacctcaagacact
tttaatgaagtccgtgatgttgcaagagctattgcttatgaactgcttttgaagggagag
acttcacttgctgtagcaacattgcaaaggctcggagaggacattgaggttagcctcaaa
caattgttgtttggtactgttagaagatctcttcgaatgcaaattgcagaagagttgaaa
agatatgggtaccttggaccacatgagtggaaaatgttggagaggatagctcttattgag
aggttatatccgagcagcagtttctggagaacctttcacggtcgtcaaaaagaacctgga
gatgctccatccagtttgactttgctagaaaacaagttgcacatgatgtgcttgttgtca
gtaaacgactgtaaaattgaatgtggcgagatcgatggagttgtgataggtccttgggca
agtataagtgaaagctgtgtgtttcctgtggttgatgaagatacaacacatgctggatac
tgggctggtgcagccttgtggtctgacgcctgggatcaaagagccatagatcgtatagtg
ctggataggcctttgcttatgggtgttcatgtattatgggagtctcaacttgagtaccat
atgtgccatgatgactgggaggaggtctataagctcctggacatgattccttcaacagtt
ttatcaaatggaaatctccaaataaatttggatggtctagattctgctgaaacagagggg
ttcaatatggtgtcttctcattatgacaagtatatttgctctcctgaagaactggatgtt
gtgtgtatgactgtgccaaatgttaaaattctgaagtttcctgctaattatatgtgctcg
gcgtggttgaaagggctctttgagcaggagcttgccaaacgatcaatttttttgaaggaa
tattgggatggtacagaagagattatacctattctggctcgcgcaggcttcattaccaag
atatcgaaaacctttgttctggatgaatctatcgaggatgtacctgatattaatttctca
aatgttggtggagagtttgacagacatgctgctcaagctcttcataaactcgttatacgc
cattgtgctcaacatgacttatcaaatcttctggacctttaccttgatcaccataagttg
gttctagataatgattctcttatatcgttacaagatgctgcaggagactgtgaatgggca
aagtggttgttgctctctagggttaaaggacgtgaatatgatacatccttatgtaatgcc
cgagccattatatcaaaaaatgtagttcttggtagcaaaatcagtgtcttagacatggaa
gaagtaatacgtacggttgatgacatggcagaaggaggaggagaaatggctgctttagca
accctaatgtatgctccttctccaatacataagtgcttgttcagtggaagtgtaaaaagg
cgttttagctcctcagcacagtgtacattggagaatctgagacctgctcttcaacgcttc
cctacactttggcgtactcttattgcggcttgctttgggcatgatgcaaatggcatttct
ttggttcctgatgcaaaaagtgtatttggcaactcagctttgtcagactatttaaattgg
cgtgaaagcatcttctcttctgctgggcatgatacttcattgcttcaaatgcttccatgc
tggttttcgaagggcattaggagattgatacaactttttgtgcagggaccttttgggtgg
caatccttagcaggggtacctacaggtgaatcatttctgcatagagacataagttatttc
attaatgctcatgaaaatggtgaggttagtgcaatgtcttgggaagtggctatccagaaa
agtgtcgagaaagagctatttgcttcttcattggaggagacaacatttggggtggagcac
tacttgcatcggggacgtgctcttggggctttcaaccatcttctaggcctacgagttcag
atgttgaatgaaaacagccataaaaagcagtccggcgcttcatctggacaagcaaatatt
cagtctgatgtgcaaatgcttcttgcacctgtgactcaaaatgaagagtctcttctttca
actgtaatgccacttgctatttcgcactttgaggattccgtgttggttgcttcgtgtgct
ttccttttggagctttgtggcttatctgcaagcatgcttcgcatagatgttgctgcctta
cgaagaatttcttctttctacaagtccagtgagtataatgagcattttcagcacttttcg
ccgaagggttcagcatttcatgctgcccctcgtgaaggtgatattacagtttctctagct
caggctctggcagatgattacatgcactgtgacagtagcggtacggctgatcaaggagag
atttctaatattggagttacagccagtaagcgttcttcacggggtgtacttgccgttcta
caacacttggaaaaggcaagtgtcccattgatggctgaaggggagatttgtggatcttgg
ttattaagtggcagtggagatggagctgagtttaggtctcaacaaaaagctgcaagccag
cactggagtttagttacagctttctgccagatgcatcagattcctctaagcacaaaatat
ctttctgtactagcaaaagacaatgattgggtcgggtttctgactgaagctcaagttgtg
gggcacccgtttgatgcaactatccaagtggcatctaaagactttagtgatccacgcctg
aagatacacatattaactgttctgagaagcatgtattctactagaaagaaacccgtgtct
tcaccaaatacagctcctaggggaaaaacaaatgagatttccatgtcaagtgaaaacaat
gggatggttcctgtggaactttttggtcttcttgcagaatgtgagaaacagaaaagtcct
ggtgaggctctgctcttaagagcaaaagacatgcgttggtctttactggcgatgattgcg
tcctgcttctccgatgtctctcctctttcatgcttaacagtatggctggagattacagca
gcaagggaaacgtcatccattaaggtgaatgatattgcctctcaaatcgcaaataatgtt
ggagcggctgtggaagctaccaatttgtcaccaggtggtaataaagaccttacatttcat
tacaataggaaaaacgcgaaacgaagatgcctgatagagtcgttatcggctgttgctgca
tcaaatgactctggtaatcctggcgttgtcaagaaatctgtttctacagaactctctcct
gaagatgaagataaaagagaactagatgatgaagatatcaaggttttaagtgatcccgac
gaaggactcacctctttatccaagatggtttcagttctttgtgagcaacgcctttttctt
cctctattgcgggctttcgaaacgtttcttccatcttgttctctcctaccgtttattcgt
gctcttcagacattttcacaaatgcggctatctgaagcatctgcacatttggcatcattt
tcggctagaatcaaggaagagcctttccatgcaagggcaaacataggaagagaagggcag
gtgggagctccatggataagctcaacagctgttacagctgcagatgcgatgctttcaact
tgcccctctgcatatgaaaaacgctgcttattgcaactcctttctgcaactgattttggg
gatggaggatctgcttcgacatactttaggcaacttcactggaaaatcaatttggccgag
cctgctttacggaaagaagatgacttataccttggcaatgaaactctagacgacgcttca
cttttgacagcactagaaaataacggacactgggaacaagcacgtaactgggcaaggcag
ttggaggccagtggaggaccatggaaatctgctgctcatcatgttaccgaaactcaggct
gaagccatggtagcagagtggaaggagttcttatgggatgtcccagaagaaagagctgca
ttatggggtcattgtcagactttgttcctaagatattccttccccgcattacaggcagga
ttatttttcttaaagcatgcggaagctgtggagaaagatattccagcaaaagaattgcat
gagatgctactactagccctacaatggttaagtggaaccatgacccagtgtagtccagca
tatcctttacatcttctgcgtgagattgagactagagtatgtctgttagctgtcgaatca
gaagctcaggctaagtgtgaaggggattttagtacgcctatttcaggtcagaactttacg
agtggaaatagctccagtatcattgaaaggacggctagtatcgttacgaagatggataat
catttaagttcaatgaagattagagctacagaacgacacgatatgagggaaagtaaccaa
atacatgtacgccatccacaagctactgatcctactagtcctcctgctgctttaggggga
atgaaaacgaagcgtagaccgaaaagctatcttccatctagaagatcccacgtggaatct
atagaaaagaataacgatcttgatgatagtattaattcccccagcaattccaggagtagc
gccgaacaatctaaaggtttgccacttcaagaagatgatgtcggagtagaggcatctgtt
tccaggtgggaggagagagttggaccagaagagttggaaagggctgtgctatctctcttg
gagtttggacaagtggcagctgctaaacagcttcaacataagctctctccgttgcatgtg
cctgctgaattcttagtcgtggatgctgcgattaaggttgcaaccgtttcaactcctagc
tgcagtgaagtgtctgtgtcaaggttggatgcagaagtcctttcacttgtaaagtcatac
aatatattagaggacaacagtatcttcgatcctcttcaggtactggaaagtttagctacc
aaatgtgcaaaagatggtgggagtggattgtgtaggagaataatagcagttgtaaaagct
gccaacgtcttggaaatttcatttactgaagcatttcgaataaggccacttgaactgctg
cagttgctttctctcaaagcacaagattcacttgaggaagcaaaactcctagtgcagact
cataccatgccaccggcaagtattgcgcaaattcttgctgaatcttttctcaagggtcta
ttggctgcacaccgtggaggatatatggattctcaaaaggatgaaggacctgctcctctt
ttgtggagactctctgacttcttgaagtgggcagagctttgtcctttagaaccagaagtt
ggccatgcgttaatgcgtttagttattactggtcaggaaattccacatgcttgtgaggtg
gaacttctgattctctcccatcacttctacaaatcatctgcttgtctagatggagtagat
gtccttgtagcccttgcagcaaccagggtggaatcttatgtgtctgagggggatttttca
tgtctggctcgtctggtgactggagtgagcaatttccatgccctgaacttcattcttgga
attcttatagagaatggtcagctggagcttcttcttcagaagtattcggctgcagaaaca
acaacgggaactgcagaatcagtccgagggtttcgattggctgttctaacgtcactgaag
cttttcaacccaaatgatctcgatgcatttgctatggtatataatcactttaatatgaag
cacgaaacagcttctctactcgagcaacaagccatgcactgtatacgactgtggttccaa
cggtacgacaaagagcaaacggaagaccttttagaatcaatgcgttatttcattgaggct
gcacaagttcactcttccattgatgctggaaataaaacccgcaatgcatgttctcaagca
tccctaatttccctccaaattcgcatgcctgatttctactggctaaacctatcggagaca
aatgctcgtcgagctcttgtagagcaatctcgcttccaggaagccttgatagttgctgag
gcttatggattgaaccaaccaggtgagtgggccctggtactatggaaccaaatgctcaaa
ccagacctgacagaacagtttgtgtctgaatttgttgctgtgctgcctctccagccatcg
atgcttgtagagcttgctagattttacagagctgaagtggcggctcgaggggaccaatca
cacttttctgtatggctttcaccaggagggttaccggcagaatggttaaagcatttaggc
cggtcatttaggtgtctattgaggaggacaagagatttgaggttacgtgttcaactggct
actgcagcaactgggttcagtgatgttttggaatcatgctcaaaggcattagataaggta
ccagaaactgccggaccacttgtcttaaggaagggacatggtgggacctaccttcctctc
atgtga
DBGET
integrated database retrieval system
